Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0956

Experiment: KB with Acridine orange 3.125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0954 and Psyr_0955 are separated by 86 nucleotidesPsyr_0955 and Psyr_0956 overlap by 8 nucleotidesPsyr_0956 and Psyr_0957 overlap by 14 nucleotidesPsyr_0957 and Psyr_0958 overlap by 4 nucleotides Psyr_0954: Psyr_0954 - Protein of unknown function UPF0153, at 1,089,329 to 1,089,553 _0954 Psyr_0955: Psyr_0955 - membrane protein, putative, at 1,089,640 to 1,090,149 _0955 Psyr_0956: Psyr_0956 - Cyclopropane-fatty-acyl-phospholipid synthase, at 1,090,142 to 1,091,410 _0956 Psyr_0957: Psyr_0957 - Protein of unknown function DUF1365, at 1,091,397 to 1,092,197 _0957 Psyr_0958: Psyr_0958 - amine oxidase, flavin-containing, at 1,092,194 to 1,093,441 _0958 Position (kb) 1090 1091 1092Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1089.154 kb on - strandat 1089.183 kb on + strandat 1089.184 kb on - strandat 1089.186 kb on - strandat 1089.186 kb on - strandat 1089.186 kb on - strandat 1089.255 kb on - strandat 1089.289 kb on + strandat 1089.289 kb on + strandat 1089.290 kb on - strandat 1089.298 kb on + strandat 1089.337 kb on - strandat 1089.337 kb on - strandat 1089.420 kb on + strand, within Psyr_0954at 1089.420 kb on + strand, within Psyr_0954at 1089.420 kb on + strand, within Psyr_0954at 1089.421 kb on - strand, within Psyr_0954at 1089.516 kb on + strand, within Psyr_0954at 1089.516 kb on + strand, within Psyr_0954at 1089.516 kb on + strand, within Psyr_0954at 1089.517 kb on - strand, within Psyr_0954at 1089.517 kb on - strand, within Psyr_0954at 1089.634 kb on + strandat 1089.635 kb on - strandat 1089.635 kb on - strandat 1089.635 kb on - strandat 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.700 kb on + strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.701 kb on - strand, within Psyr_0955at 1089.702 kb on + strand, within Psyr_0955at 1089.703 kb on - strand, within Psyr_0955at 1089.785 kb on + strand, within Psyr_0955at 1089.785 kb on + strand, within Psyr_0955at 1089.785 kb on + strand, within Psyr_0955at 1089.785 kb on + strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.786 kb on - strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.788 kb on + strand, within Psyr_0955at 1089.789 kb on - strand, within Psyr_0955at 1089.789 kb on - strand, within Psyr_0955at 1089.789 kb on - strand, within Psyr_0955at 1089.789 kb on - strand, within Psyr_0955at 1089.789 kb on - strand, within Psyr_0955at 1089.917 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.960 kb on + strand, within Psyr_0955at 1089.961 kb on - strand, within Psyr_0955at 1090.143 kb on + strandat 1090.143 kb on + strandat 1090.144 kb on - strandat 1090.245 kb on + strandat 1090.254 kb on + strandat 1090.254 kb on + strandat 1090.254 kb on + strandat 1090.255 kb on - strandat 1090.461 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.578 kb on + strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.579 kb on - strand, within Psyr_0956at 1090.785 kb on + strand, within Psyr_0956at 1090.786 kb on - strand, within Psyr_0956at 1090.789 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.929 kb on + strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.930 kb on - strand, within Psyr_0956at 1090.981 kb on - strand, within Psyr_0956at 1090.981 kb on - strand, within Psyr_0956at 1091.369 kb on - strandat 1091.392 kb on + strandat 1091.392 kb on + strandat 1091.481 kb on + strand, within Psyr_0957at 1091.515 kb on + strand, within Psyr_0957at 1091.516 kb on - strand, within Psyr_0957at 1091.516 kb on - strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.655 kb on + strand, within Psyr_0957at 1091.656 kb on - strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.785 kb on + strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1091.786 kb on - strand, within Psyr_0957at 1092.016 kb on + strand, within Psyr_0957at 1092.017 kb on - strand, within Psyr_0957at 1092.110 kb on - strand, within Psyr_0957at 1092.181 kb on + strandat 1092.182 kb on - strandat 1092.182 kb on - strandat 1092.283 kb on - strandat 1092.283 kb on - strandat 1092.349 kb on - strand, within Psyr_0958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml
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1,089,154 - -0.6
1,089,183 + -3.4
1,089,184 - -0.6
1,089,186 - +0.4
1,089,186 - +4.3
1,089,186 - -1.1
1,089,255 - -0.2
1,089,289 + -4.0
1,089,289 + -0.8
1,089,290 - -3.0
1,089,298 + +0.3
1,089,337 - +0.7
1,089,337 - +1.7
1,089,420 + Psyr_0954 0.40 -0.0
1,089,420 + Psyr_0954 0.40 -0.6
1,089,420 + Psyr_0954 0.40 -0.5
1,089,421 - Psyr_0954 0.41 +0.7
1,089,516 + Psyr_0954 0.83 -1.3
1,089,516 + Psyr_0954 0.83 +3.2
1,089,516 + Psyr_0954 0.83 +4.7
1,089,517 - Psyr_0954 0.84 -0.0
1,089,517 - Psyr_0954 0.84 +0.4
1,089,634 + -1.5
1,089,635 - -2.0
1,089,635 - +0.7
1,089,635 - -0.7
1,089,700 + Psyr_0955 0.12 -0.3
1,089,700 + Psyr_0955 0.12 +1.9
1,089,700 + Psyr_0955 0.12 -3.9
1,089,701 - Psyr_0955 0.12 -0.9
1,089,701 - Psyr_0955 0.12 +1.1
1,089,701 - Psyr_0955 0.12 +0.4
1,089,701 - Psyr_0955 0.12 +0.6
1,089,701 - Psyr_0955 0.12 -3.5
1,089,702 + Psyr_0955 0.12 -4.0
1,089,703 - Psyr_0955 0.12 -0.7
1,089,785 + Psyr_0955 0.28 +1.2
1,089,785 + Psyr_0955 0.28 -0.6
1,089,785 + Psyr_0955 0.28 +0.1
1,089,785 + Psyr_0955 0.28 -0.5
1,089,786 - Psyr_0955 0.29 -0.6
1,089,786 - Psyr_0955 0.29 -0.3
1,089,788 + Psyr_0955 0.29 +0.4
1,089,788 + Psyr_0955 0.29 -2.9
1,089,788 + Psyr_0955 0.29 -2.7
1,089,788 + Psyr_0955 0.29 -0.3
1,089,789 - Psyr_0955 0.29 -0.1
1,089,789 - Psyr_0955 0.29 +1.2
1,089,789 - Psyr_0955 0.29 -0.6
1,089,789 - Psyr_0955 0.29 -1.6
1,089,789 - Psyr_0955 0.29 -0.4
1,089,917 + Psyr_0955 0.54 +0.4
1,089,960 + Psyr_0955 0.63 -3.5
1,089,960 + Psyr_0955 0.63 +2.7
1,089,960 + Psyr_0955 0.63 +3.7
1,089,960 + Psyr_0955 0.63 -1.1
1,089,960 + Psyr_0955 0.63 -1.4
1,089,960 + Psyr_0955 0.63 -0.7
1,089,961 - Psyr_0955 0.63 +2.0
1,090,143 + +4.1
1,090,143 + +0.1
1,090,144 - -0.6
1,090,245 + +0.4
1,090,254 + -0.4
1,090,254 + -2.5
1,090,254 + +0.5
1,090,255 - +3.9
1,090,461 + Psyr_0956 0.25 +0.8
1,090,578 + Psyr_0956 0.34 -2.1
1,090,578 + Psyr_0956 0.34 +0.0
1,090,579 - Psyr_0956 0.34 -2.9
1,090,579 - Psyr_0956 0.34 -0.4
1,090,579 - Psyr_0956 0.34 +0.4
1,090,579 - Psyr_0956 0.34 +0.4
1,090,785 + Psyr_0956 0.51 -1.6
1,090,786 - Psyr_0956 0.51 +0.0
1,090,789 + Psyr_0956 0.51 +0.4
1,090,929 + Psyr_0956 0.62 -0.9
1,090,929 + Psyr_0956 0.62 -3.3
1,090,929 + Psyr_0956 0.62 +1.0
1,090,929 + Psyr_0956 0.62 -2.7
1,090,929 + Psyr_0956 0.62 -1.3
1,090,929 + Psyr_0956 0.62 -3.6
1,090,929 + Psyr_0956 0.62 +3.7
1,090,929 + Psyr_0956 0.62 -1.6
1,090,930 - Psyr_0956 0.62 +0.4
1,090,930 - Psyr_0956 0.62 -4.7
1,090,930 - Psyr_0956 0.62 +0.2
1,090,930 - Psyr_0956 0.62 +3.4
1,090,930 - Psyr_0956 0.62 +3.7
1,090,930 - Psyr_0956 0.62 -1.6
1,090,930 - Psyr_0956 0.62 -1.7
1,090,930 - Psyr_0956 0.62 +1.4
1,090,930 - Psyr_0956 0.62 +1.4
1,090,981 - Psyr_0956 0.66 -0.9
1,090,981 - Psyr_0956 0.66 +0.9
1,091,369 - +1.6
1,091,392 + -3.6
1,091,392 + +0.2
1,091,481 + Psyr_0957 0.10 -2.9
1,091,515 + Psyr_0957 0.15 -1.3
1,091,516 - Psyr_0957 0.15 -1.9
1,091,516 - Psyr_0957 0.15 +4.1
1,091,655 + Psyr_0957 0.32 +1.4
1,091,655 + Psyr_0957 0.32 -1.2
1,091,655 + Psyr_0957 0.32 +2.0
1,091,656 - Psyr_0957 0.32 -0.3
1,091,785 + Psyr_0957 0.48 +2.2
1,091,785 + Psyr_0957 0.48 -0.7
1,091,785 + Psyr_0957 0.48 -0.8
1,091,785 + Psyr_0957 0.48 +0.8
1,091,785 + Psyr_0957 0.48 -1.2
1,091,785 + Psyr_0957 0.48 -3.8
1,091,785 + Psyr_0957 0.48 -3.3
1,091,785 + Psyr_0957 0.48 +2.3
1,091,785 + Psyr_0957 0.48 +1.7
1,091,785 + Psyr_0957 0.48 -4.9
1,091,785 + Psyr_0957 0.48 -0.0
1,091,786 - Psyr_0957 0.49 -1.9
1,091,786 - Psyr_0957 0.49 +2.4
1,091,786 - Psyr_0957 0.49 -1.4
1,091,786 - Psyr_0957 0.49 -0.7
1,091,786 - Psyr_0957 0.49 +0.4
1,091,786 - Psyr_0957 0.49 -2.2
1,091,786 - Psyr_0957 0.49 +1.4
1,091,786 - Psyr_0957 0.49 -1.9
1,092,016 + Psyr_0957 0.77 +0.4
1,092,017 - Psyr_0957 0.77 -3.2
1,092,110 - Psyr_0957 0.89 -1.2
1,092,181 + +0.2
1,092,182 - -3.7
1,092,182 - +3.4
1,092,283 - -0.7
1,092,283 - +1.1
1,092,349 - Psyr_0958 0.12 -3.0

Or see this region's nucleotide sequence