Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0887

Experiment: KB with Acridine orange 3.125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0886 and Psyr_0887 are separated by 3 nucleotidesPsyr_0887 and Psyr_0888 are separated by 96 nucleotides Psyr_0886: Psyr_0886 - Response regulator receiver, at 1,008,526 to 1,009,530 _0886 Psyr_0887: Psyr_0887 - sensory box protein, at 1,009,534 to 1,010,016 _0887 Psyr_0888: Psyr_0888 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 1,010,113 to 1,011,369 _0888 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1008.542 kb on + strandat 1008.549 kb on - strandat 1008.660 kb on + strand, within Psyr_0886at 1008.660 kb on + strand, within Psyr_0886at 1009.022 kb on + strand, within Psyr_0886at 1009.023 kb on - strand, within Psyr_0886at 1009.142 kb on - strand, within Psyr_0886at 1009.142 kb on - strand, within Psyr_0886at 1009.203 kb on + strand, within Psyr_0886at 1009.429 kb on + strand, within Psyr_0886at 1009.430 kb on - strandat 1009.516 kb on + strandat 1009.516 kb on + strandat 1009.517 kb on - strandat 1009.517 kb on - strandat 1009.517 kb on - strandat 1009.517 kb on - strandat 1009.517 kb on - strandat 1009.598 kb on + strand, within Psyr_0887at 1009.599 kb on - strand, within Psyr_0887at 1009.599 kb on - strand, within Psyr_0887at 1009.625 kb on - strand, within Psyr_0887at 1009.644 kb on + strand, within Psyr_0887at 1009.644 kb on + strand, within Psyr_0887at 1009.645 kb on - strand, within Psyr_0887at 1009.645 kb on - strand, within Psyr_0887at 1009.679 kb on - strand, within Psyr_0887at 1009.679 kb on - strand, within Psyr_0887at 1009.679 kb on - strand, within Psyr_0887at 1009.679 kb on - strand, within Psyr_0887at 1009.679 kb on - strand, within Psyr_0887at 1009.679 kb on - strand, within Psyr_0887at 1009.805 kb on - strand, within Psyr_0887at 1009.825 kb on + strand, within Psyr_0887at 1009.858 kb on + strand, within Psyr_0887at 1009.858 kb on + strand, within Psyr_0887at 1009.858 kb on + strand, within Psyr_0887at 1009.858 kb on + strand, within Psyr_0887at 1009.859 kb on - strand, within Psyr_0887at 1009.859 kb on - strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.927 kb on + strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887at 1009.928 kb on - strand, within Psyr_0887

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml
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1,008,542 + -0.9
1,008,549 - -0.3
1,008,660 + Psyr_0886 0.13 -1.7
1,008,660 + Psyr_0886 0.13 -1.4
1,009,022 + Psyr_0886 0.49 -0.4
1,009,023 - Psyr_0886 0.49 +0.7
1,009,142 - Psyr_0886 0.61 -1.5
1,009,142 - Psyr_0886 0.61 +1.1
1,009,203 + Psyr_0886 0.67 -2.4
1,009,429 + Psyr_0886 0.90 +1.9
1,009,430 - +0.2
1,009,516 + +0.9
1,009,516 + -1.4
1,009,517 - -1.2
1,009,517 - -1.1
1,009,517 - -1.3
1,009,517 - -0.7
1,009,517 - +3.6
1,009,598 + Psyr_0887 0.13 +0.4
1,009,599 - Psyr_0887 0.13 +1.2
1,009,599 - Psyr_0887 0.13 +0.4
1,009,625 - Psyr_0887 0.19 -1.7
1,009,644 + Psyr_0887 0.23 -0.9
1,009,644 + Psyr_0887 0.23 +5.0
1,009,645 - Psyr_0887 0.23 +2.8
1,009,645 - Psyr_0887 0.23 -1.5
1,009,679 - Psyr_0887 0.30 -1.3
1,009,679 - Psyr_0887 0.30 +1.3
1,009,679 - Psyr_0887 0.30 -1.3
1,009,679 - Psyr_0887 0.30 -0.4
1,009,679 - Psyr_0887 0.30 +0.2
1,009,679 - Psyr_0887 0.30 -0.9
1,009,805 - Psyr_0887 0.56 -2.3
1,009,825 + Psyr_0887 0.60 +0.7
1,009,858 + Psyr_0887 0.67 -1.8
1,009,858 + Psyr_0887 0.67 -0.2
1,009,858 + Psyr_0887 0.67 -1.7
1,009,858 + Psyr_0887 0.67 -2.1
1,009,859 - Psyr_0887 0.67 -1.4
1,009,859 - Psyr_0887 0.67 -2.1
1,009,927 + Psyr_0887 0.81 -0.0
1,009,927 + Psyr_0887 0.81 -1.7
1,009,927 + Psyr_0887 0.81 -0.8
1,009,927 + Psyr_0887 0.81 +0.4
1,009,927 + Psyr_0887 0.81 -3.0
1,009,927 + Psyr_0887 0.81 -3.2
1,009,927 + Psyr_0887 0.81 -0.9
1,009,927 + Psyr_0887 0.81 +1.4
1,009,927 + Psyr_0887 0.81 -0.6
1,009,927 + Psyr_0887 0.81 +0.4
1,009,928 - Psyr_0887 0.82 -4.0
1,009,928 - Psyr_0887 0.82 +0.8
1,009,928 - Psyr_0887 0.82 -0.1
1,009,928 - Psyr_0887 0.82 +5.0
1,009,928 - Psyr_0887 0.82 +0.4
1,009,928 - Psyr_0887 0.82 -0.6
1,009,928 - Psyr_0887 0.82 +0.7
1,009,928 - Psyr_0887 0.82 -0.3

Or see this region's nucleotide sequence