Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0827

Experiment: KB with Acridine orange 3.125 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Acridine orange 3.125 ug/ml
935,943	+		Psyr_0826	0.61	+0.5
935,943	+		Psyr_0826	0.61	+0.5
936,038	+		Psyr_0826	0.67	+0.5
936,220	+		Psyr_0826	0.78	-2.7
936,220	+		Psyr_0826	0.78	+0.5
936,221	-		Psyr_0826	0.78	+2.5
936,221	-		Psyr_0826	0.78	-3.2
936,332	+		Psyr_0826	0.85	+0.5
936,332	+		Psyr_0826	0.85	-2.6
936,333	-		Psyr_0826	0.85	-2.7
936,333	-		Psyr_0826	0.85	+0.5
936,333	-		Psyr_0826	0.85	+4.0
936,578	+				-4.2
936,579	-				+0.5
936,581	+				+1.5
936,661	+				-3.8
936,662	-				-0.5
936,687	-				-1.8
936,710	+				-2.3
936,710	+				-2.1
936,710	+				-0.5
936,710	+				-1.5
936,711	-				+2.5
936,711	-				+0.5
936,711	-				+0.3
936,711	-				-1.0
936,711	-				+1.5
936,762	+				+1.5
936,763	-				+0.7
936,797	-				-1.7
936,817	+				+0.1
936,817	+				+3.5
936,817	+				-2.5
936,817	+				+0.6
936,818	-				+1.7
936,818	-				+0.8
936,818	-				-0.3
936,959	+		Psyr_0827	0.14	+0.5
936,959	+		Psyr_0827	0.14	+2.5
936,969	+		Psyr_0827	0.15	-0.5
937,080	+		Psyr_0827	0.28	+0.2
937,080	+		Psyr_0827	0.28	-0.6
937,081	-		Psyr_0827	0.28	+0.2
937,119	+		Psyr_0827	0.33	-4.2
937,482	+		Psyr_0827	0.75	+1.4
937,531	+		Psyr_0827	0.81	-1.9
937,531	+		Psyr_0827	0.81	-2.9
937,532	-		Psyr_0827	0.81	-2.0
937,682	+				+0.5
937,683	-				-3.2
937,748	+				-2.1
937,748	+				+0.2
937,749	-				-1.5
937,749	-				-0.4
937,749	-				+0.0
938,292	-		Psyr_0828	0.75	+1.1
938,310	+		Psyr_0828	0.77	+2.8
938,363	-		Psyr_0828	0.84	-0.3
938,418	-				-2.5
938,472	+				-3.2
938,492	+				-1.0
938,492	+				+3.3
938,492	+				-1.1
938,492	+				+3.9
938,492	+				+0.7
938,492	+				-4.5
938,492	+				-0.0
938,492	+				+0.7
938,492	+				+3.0
938,492	+				+4.3
938,492	+				+0.2
938,492	+				+0.5
938,492	+				-0.2
938,493	-				-1.1
938,493	-				+3.3
938,493	-				+0.5
938,493	-				+0.6
938,493	-				-1.4
938,493	-				+4.0
938,493	-				+2.0
938,493	-				+0.3
938,493	-				-3.3
938,493	-				-1.2
938,493	-				+1.4
938,493	-				-2.1
938,493	-				-0.4
938,493	-				-2.1
938,493	-				+1.5
938,633	+				+1.8
938,633	+				+1.4
938,634	-				+3.5
938,673	+				-1.9
938,673	+				+2.3
938,673	+				-2.5
938,673	+				+0.5
938,674	-				-0.1
938,674	-				+3.8
938,693	+				-0.4