Experiment: KB with Acridine orange 3.125 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0674 and Psyr_0675 are separated by 32 nucleotides Psyr_0675 and Psyr_0676 are separated by 94 nucleotides
Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166
_0674
Psyr_0675: Psyr_0675 - transcriptional regulator, TetR family, at 765,199 to 765,861
_0675
Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353
_0676
Position (kb) 765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 764.257 kb on - strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.332 kb on + strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.333 kb on - strand at 764.376 kb on - strand at 764.392 kb on - strand at 764.424 kb on + strand at 764.513 kb on - strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.533 kb on + strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.534 kb on - strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.550 kb on + strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.551 kb on - strand at 764.844 kb on + strand, within Psyr_0674 at 764.844 kb on + strand, within Psyr_0674 at 764.844 kb on + strand, within Psyr_0674 at 764.845 kb on - strand, within Psyr_0674 at 765.200 kb on + strand at 765.200 kb on + strand at 765.200 kb on + strand at 765.201 kb on - strand at 765.201 kb on - strand at 765.201 kb on - strand at 765.333 kb on - strand, within Psyr_0675 at 765.464 kb on + strand, within Psyr_0675 at 765.464 kb on + strand, within Psyr_0675 at 765.558 kb on + strand, within Psyr_0675 at 765.559 kb on - strand, within Psyr_0675 at 765.560 kb on + strand, within Psyr_0675 at 765.561 kb on - strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.653 kb on + strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.654 kb on - strand, within Psyr_0675 at 765.666 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.677 kb on + strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.678 kb on - strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.680 kb on + strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.681 kb on - strand, within Psyr_0675 at 765.904 kb on + strand at 765.905 kb on - strand at 765.957 kb on + strand at 766.341 kb on + strand, within Psyr_0676 at 766.341 kb on + strand, within Psyr_0676 at 766.341 kb on + strand, within Psyr_0676 at 766.341 kb on + strand, within Psyr_0676 at 766.342 kb on - strand, within Psyr_0676 at 766.342 kb on - strand, within Psyr_0676 at 766.569 kb on + strand, within Psyr_0676 at 766.570 kb on - strand, within Psyr_0676 at 766.570 kb on - strand, within Psyr_0676
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Acridine orange 3.125 ug/ml remove 764,257 - +0.5 764,332 + +0.3 764,332 + -2.1 764,332 + +0.7 764,332 + -3.6 764,333 - +4.0 764,333 - -0.5 764,333 - -1.8 764,376 - +1.1 764,392 - -0.5 764,424 + -1.4 764,513 - +0.5 764,533 + -2.1 764,533 + +1.5 764,533 + -0.9 764,533 + -0.1 764,533 + -3.6 764,533 + +1.6 764,533 + -0.4 764,533 + +0.3 764,533 + +0.9 764,533 + +1.4 764,533 + -0.6 764,533 + +1.6 764,534 - +3.3 764,534 - -2.7 764,534 - +4.6 764,534 - -2.2 764,534 - +0.8 764,550 + +1.0 764,550 + -0.2 764,550 + -1.8 764,550 + +0.4 764,551 - -4.2 764,551 - -0.9 764,551 - +0.7 764,844 + Psyr_0674 0.46 +4.0 764,844 + Psyr_0674 0.46 +1.6 764,844 + Psyr_0674 0.46 -0.4 764,845 - Psyr_0674 0.46 -2.2 765,200 + +0.1 765,200 + -0.1 765,200 + -0.3 765,201 - +3.7 765,201 - -1.0 765,201 - -0.1 765,333 - Psyr_0675 0.20 -1.1 765,464 + Psyr_0675 0.40 +2.8 765,464 + Psyr_0675 0.40 +1.6 765,558 + Psyr_0675 0.54 -2.5 765,559 - Psyr_0675 0.54 -0.3 765,560 + Psyr_0675 0.54 -2.5 765,561 - Psyr_0675 0.55 +4.2 765,653 + Psyr_0675 0.68 +0.9 765,653 + Psyr_0675 0.68 -1.8 765,653 + Psyr_0675 0.68 -3.2 765,653 + Psyr_0675 0.68 -0.5 765,653 + Psyr_0675 0.68 +2.0 765,653 + Psyr_0675 0.68 -1.4 765,653 + Psyr_0675 0.68 +3.5 765,653 + Psyr_0675 0.68 +5.5 765,653 + Psyr_0675 0.68 +0.9 765,653 + Psyr_0675 0.68 -1.7 765,653 + Psyr_0675 0.68 -4.3 765,654 - Psyr_0675 0.69 -0.3 765,654 - Psyr_0675 0.69 -0.3 765,654 - Psyr_0675 0.69 -0.2 765,654 - Psyr_0675 0.69 +0.5 765,654 - Psyr_0675 0.69 -0.2 765,654 - Psyr_0675 0.69 -1.2 765,654 - Psyr_0675 0.69 +0.9 765,654 - Psyr_0675 0.69 -0.2 765,654 - Psyr_0675 0.69 -0.1 765,654 - Psyr_0675 0.69 -0.5 765,666 + Psyr_0675 0.70 -0.0 765,677 + Psyr_0675 0.72 -3.1 765,677 + Psyr_0675 0.72 -2.7 765,677 + Psyr_0675 0.72 -1.2 765,677 + Psyr_0675 0.72 -0.3 765,677 + Psyr_0675 0.72 -1.0 765,678 - Psyr_0675 0.72 -0.9 765,678 - Psyr_0675 0.72 -4.2 765,678 - Psyr_0675 0.72 -0.6 765,678 - Psyr_0675 0.72 +0.5 765,678 - Psyr_0675 0.72 -1.7 765,678 - Psyr_0675 0.72 +3.1 765,680 + Psyr_0675 0.73 -0.4 765,680 + Psyr_0675 0.73 +0.6 765,680 + Psyr_0675 0.73 -1.6 765,681 - Psyr_0675 0.73 -4.0 765,681 - Psyr_0675 0.73 +0.5 765,681 - Psyr_0675 0.73 +0.4 765,681 - Psyr_0675 0.73 +3.7 765,681 - Psyr_0675 0.73 +1.5 765,681 - Psyr_0675 0.73 -3.7 765,681 - Psyr_0675 0.73 -4.0 765,904 + -1.2 765,905 - +2.1 765,957 + -0.6 766,341 + Psyr_0676 0.28 +1.5 766,341 + Psyr_0676 0.28 -1.4 766,341 + Psyr_0676 0.28 -0.3 766,341 + Psyr_0676 0.28 +0.8 766,342 - Psyr_0676 0.28 +2.0 766,342 - Psyr_0676 0.28 -0.8 766,569 + Psyr_0676 0.44 +3.7 766,570 - Psyr_0676 0.44 -0.7 766,570 - Psyr_0676 0.44 -2.5
Or see this region's nucleotide sequence