Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03930 and PS417_03935 are separated by 61 nucleotides PS417_03935 and PS417_03940 overlap by 4 nucleotides PS417_03940 and PS417_03945 are separated by 113 nucleotides
PS417_03930: PS417_03930 - thymidine phosphorylase, at 877,230 to 879,353
_03930
PS417_03935: PS417_03935 - N-acetyl-anhydromuranmyl-L-alanine amidase, at 879,415 to 879,978
_03935
PS417_03940: PS417_03940 - membrane protein, at 879,975 to 880,811
_03940
PS417_03945: PS417_03945 - chemotaxis protein, at 880,925 to 882,955
_03945
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1 at 878.463 kb on + strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.463 kb on + strand, within PS417_03930 at 878.464 kb on - strand, within PS417_03930 at 879.022 kb on + strand, within PS417_03930 at 879.023 kb on - strand, within PS417_03930 at 879.186 kb on + strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.187 kb on - strand at 879.414 kb on + strand at 879.520 kb on - strand, within PS417_03935 at 879.604 kb on + strand, within PS417_03935 at 879.604 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.626 kb on + strand, within PS417_03935 at 879.627 kb on - strand, within PS417_03935 at 880.003 kb on + strand at 880.136 kb on - strand, within PS417_03940 at 880.136 kb on - strand, within PS417_03940 at 880.139 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand, within PS417_03940 at 880.231 kb on - strand at 880.492 kb on - strand, within PS417_03940 at 880.817 kb on + strand at 880.831 kb on + strand at 880.832 kb on - strand at 880.832 kb on - strand at 880.861 kb on + strand at 880.861 kb on + strand at 880.862 kb on - strand at 880.862 kb on - strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.863 kb on + strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.864 kb on - strand at 880.919 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 878,463 + PS417_03930 0.58 -0.0 878,463 + PS417_03930 0.58 -0.1 878,463 + PS417_03930 0.58 -1.6 878,464 - PS417_03930 0.58 -0.1 879,022 + PS417_03930 0.84 +0.6 879,023 - PS417_03930 0.84 -0.3 879,186 + -0.4 879,187 - +0.8 879,187 - -0.3 879,187 - -1.5 879,187 - +1.2 879,187 - +0.5 879,187 - -0.5 879,187 - +0.3 879,187 - -0.4 879,414 + -0.0 879,520 - PS417_03935 0.19 -0.6 879,604 + PS417_03935 0.34 -1.4 879,604 + PS417_03935 0.34 -0.5 879,626 + PS417_03935 0.37 -1.2 879,626 + PS417_03935 0.37 -0.6 879,626 + PS417_03935 0.37 -1.1 879,627 - PS417_03935 0.38 -0.6 880,003 + -0.0 880,136 - PS417_03940 0.19 -0.4 880,136 - PS417_03940 0.19 -0.4 880,139 - PS417_03940 0.20 -0.3 880,231 - PS417_03940 0.31 -2.3 880,231 - PS417_03940 0.31 +0.2 880,231 - PS417_03940 0.31 +0.7 880,231 - +0.8 880,492 - PS417_03940 0.62 +1.5 880,817 + +0.2 880,831 + -0.2 880,832 - +0.1 880,832 - +0.3 880,861 + -1.1 880,861 + -0.4 880,862 - +0.6 880,862 - -0.2 880,863 + +0.5 880,863 + +0.2 880,863 + +0.5 880,863 + -1.4 880,864 - +1.2 880,864 - -0.6 880,864 - +0.1 880,864 - +0.4 880,864 - -0.3 880,919 + +0.0
Or see this region's nucleotide sequence