Strain Fitness in Pseudomonas simiae WCS417 around PS417_27700

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27695 and PS417_27700 are separated by 79 nucleotidesPS417_27700 and PS417_27705 overlap by 29 nucleotides PS417_27695: PS417_27695 - alanine racemase, at 5,974,279 to 5,975,352 _27695 PS417_27700: PS417_27700 - cytochrome C2, at 5,975,432 to 5,975,785 _27700 PS417_27705: PS417_27705 - amino acid dehydrogenase, at 5,975,757 to 5,977,058 _27705 Position (kb) 5975 5976Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5976.233 kb on - strand, within PS417_27705

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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5,976,233 - PS417_27705 0.37 -5.7

Or see this region's nucleotide sequence