Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02665 and PS417_02670 overlap by 4 nucleotides PS417_02670 and PS417_02675 overlap by 4 nucleotides
PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466
_02665
PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338
_02670
PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051
_02675
Position (kb) 611
612
613 Strain fitness (log2 ratio) -2
-1
0
1 at 610.534 kb on + strand, within PS417_02665 at 610.535 kb on - strand, within PS417_02665 at 610.535 kb on - strand, within PS417_02665 at 610.567 kb on + strand, within PS417_02665 at 610.567 kb on + strand, within PS417_02665 at 610.568 kb on - strand, within PS417_02665 at 610.642 kb on + strand, within PS417_02665 at 610.642 kb on + strand, within PS417_02665 at 610.748 kb on + strand, within PS417_02665 at 610.783 kb on + strand, within PS417_02665 at 610.783 kb on + strand, within PS417_02665 at 610.783 kb on + strand, within PS417_02665 at 610.784 kb on - strand, within PS417_02665 at 610.935 kb on - strand, within PS417_02665 at 610.963 kb on + strand, within PS417_02665 at 610.963 kb on + strand, within PS417_02665 at 610.964 kb on - strand, within PS417_02665 at 610.964 kb on - strand, within PS417_02665 at 610.993 kb on + strand, within PS417_02665 at 610.994 kb on - strand, within PS417_02665 at 610.994 kb on - strand, within PS417_02665 at 611.029 kb on + strand, within PS417_02665 at 611.029 kb on + strand, within PS417_02665 at 611.029 kb on + strand, within PS417_02665 at 611.030 kb on - strand, within PS417_02665 at 611.030 kb on - strand, within PS417_02665 at 611.030 kb on - strand, within PS417_02665 at 611.127 kb on - strand, within PS417_02665 at 611.127 kb on - strand, within PS417_02665 at 611.449 kb on - strand at 611.449 kb on - strand at 611.628 kb on + strand, within PS417_02670 at 611.628 kb on + strand, within PS417_02670 at 611.758 kb on - strand, within PS417_02670 at 611.961 kb on + strand, within PS417_02670 at 611.962 kb on - strand, within PS417_02670 at 612.307 kb on - strand at 612.307 kb on - strand at 612.335 kb on - strand at 612.335 kb on - strand at 612.347 kb on - strand at 612.374 kb on + strand at 612.377 kb on + strand at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.727 kb on + strand, within PS417_02675 at 613.049 kb on + strand at 613.050 kb on - strand at 613.117 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.239 kb on + strand at 613.240 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 610,534 + PS417_02665 0.27 -0.1 610,535 - PS417_02665 0.27 +0.0 610,535 - PS417_02665 0.27 +0.8 610,567 + PS417_02665 0.30 +0.7 610,567 + PS417_02665 0.30 +0.6 610,568 - PS417_02665 0.30 -0.4 610,642 + PS417_02665 0.35 -0.7 610,642 + PS417_02665 0.35 +0.9 610,748 + PS417_02665 0.44 +0.1 610,783 + PS417_02665 0.46 +0.2 610,783 + PS417_02665 0.46 +0.8 610,783 + PS417_02665 0.46 +0.0 610,784 - PS417_02665 0.47 +0.3 610,935 - PS417_02665 0.58 +0.1 610,963 + PS417_02665 0.61 +0.5 610,963 + PS417_02665 0.61 -0.3 610,964 - PS417_02665 0.61 -0.2 610,964 - PS417_02665 0.61 -1.7 610,993 + PS417_02665 0.63 +0.6 610,994 - PS417_02665 0.63 +0.4 610,994 - PS417_02665 0.63 +0.0 611,029 + PS417_02665 0.66 -1.5 611,029 + PS417_02665 0.66 +0.4 611,029 + PS417_02665 0.66 -0.1 611,030 - PS417_02665 0.66 +0.7 611,030 - PS417_02665 0.66 +0.2 611,030 - PS417_02665 0.66 +0.0 611,127 - PS417_02665 0.73 -0.0 611,127 - PS417_02665 0.73 +0.0 611,449 - -0.1 611,449 - -1.0 611,628 + PS417_02670 0.19 -0.4 611,628 + PS417_02670 0.19 -0.1 611,758 - PS417_02670 0.34 -1.7 611,961 + PS417_02670 0.57 -0.3 611,962 - PS417_02670 0.57 -0.9 612,307 - -0.6 612,307 - +0.5 612,335 - +0.5 612,335 - -1.9 612,347 - -0.3 612,374 + +1.0 612,377 + -0.1 612,561 - PS417_02675 0.32 -0.1 612,561 - PS417_02675 0.32 +0.5 612,561 - PS417_02675 0.32 -0.1 612,561 - PS417_02675 0.32 +0.1 612,727 + PS417_02675 0.55 -0.2 613,049 + -0.5 613,050 - -0.4 613,117 - -0.3 613,237 + +0.2 613,237 + +0.5 613,237 + +0.0 613,238 - -0.8 613,238 - +0.1 613,238 - -0.6 613,238 - -0.4 613,239 + -0.7 613,240 - -0.4
Or see this region's nucleotide sequence