Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_23150 and PS417_23155 overlap by 1 nucleotides PS417_23155 and PS417_23160 are separated by 12 nucleotides PS417_23160 and PS417_23165 are separated by 29 nucleotides PS417_23165 and PS417_23170 are separated by 92 nucleotides PS417_23170 and PS417_23175 are separated by 14 nucleotides
PS417_23150: PS417_23150 - Cro/Cl family transcriptional regulator, at 5,018,517 to 5,019,500
_23150
PS417_23155: PS417_23155 - pilus assembly protein PilW, at 5,019,500 to 5,020,258
_23155
PS417_23160: PS417_23160 - 50S rRNA methyltransferase, at 5,020,271 to 5,021,419
_23160
PS417_23165: PS417_23165 - nucleoside diphosphate kinase, at 5,021,449 to 5,021,874
_23165
PS417_23170: PS417_23170 - FeS assembly protein IscX, at 5,021,967 to 5,022,167
_23170
PS417_23175: PS417_23175 - 2Fe-2S ferredoxin, at 5,022,182 to 5,022,523
_23175
Position (kb) 5020
5021
5022 Strain fitness (log2 ratio) -1
0
1
2 at 5019.517 kb on - strand at 5019.624 kb on - strand, within PS417_23155 at 5019.624 kb on - strand, within PS417_23155 at 5019.624 kb on - strand, within PS417_23155 at 5019.624 kb on - strand, within PS417_23155 at 5019.624 kb on - strand, within PS417_23155 at 5019.629 kb on - strand, within PS417_23155 at 5019.629 kb on - strand, within PS417_23155 at 5019.629 kb on - strand, within PS417_23155 at 5019.667 kb on - strand, within PS417_23155 at 5019.667 kb on - strand, within PS417_23155 at 5019.667 kb on - strand at 5019.670 kb on - strand, within PS417_23155 at 5019.670 kb on - strand, within PS417_23155 at 5019.688 kb on - strand, within PS417_23155 at 5019.688 kb on - strand, within PS417_23155 at 5019.688 kb on - strand, within PS417_23155 at 5019.982 kb on - strand, within PS417_23155 at 5019.982 kb on - strand, within PS417_23155 at 5020.141 kb on - strand, within PS417_23155 at 5020.141 kb on - strand, within PS417_23155 at 5020.259 kb on - strand at 5020.334 kb on - strand at 5020.336 kb on - strand at 5020.336 kb on - strand at 5020.435 kb on - strand, within PS417_23160 at 5020.615 kb on - strand, within PS417_23160 at 5020.615 kb on - strand, within PS417_23160 at 5020.657 kb on - strand, within PS417_23160 at 5021.439 kb on - strand at 5021.895 kb on - strand at 5021.923 kb on - strand at 5021.925 kb on - strand at 5022.145 kb on - strand, within PS417_23170 at 5022.145 kb on - strand, within PS417_23170 at 5022.159 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 5,019,517 - +0.1 5,019,624 - PS417_23155 0.16 +0.7 5,019,624 - PS417_23155 0.16 +0.1 5,019,624 - PS417_23155 0.16 +1.1 5,019,624 - PS417_23155 0.16 -0.2 5,019,624 - PS417_23155 0.16 +0.4 5,019,629 - PS417_23155 0.17 +0.2 5,019,629 - PS417_23155 0.17 +0.2 5,019,629 - PS417_23155 0.17 +0.1 5,019,667 - PS417_23155 0.22 -0.0 5,019,667 - PS417_23155 0.22 +0.5 5,019,667 - +1.1 5,019,670 - PS417_23155 0.22 +0.7 5,019,670 - PS417_23155 0.22 -0.7 5,019,688 - PS417_23155 0.25 -0.5 5,019,688 - PS417_23155 0.25 -0.1 5,019,688 - PS417_23155 0.25 +1.0 5,019,982 - PS417_23155 0.64 +1.1 5,019,982 - PS417_23155 0.64 -0.3 5,020,141 - PS417_23155 0.84 -0.8 5,020,141 - PS417_23155 0.84 +0.1 5,020,259 - +0.6 5,020,334 - +0.0 5,020,336 - -0.6 5,020,336 - +0.0 5,020,435 - PS417_23160 0.14 +0.1 5,020,615 - PS417_23160 0.30 -1.2 5,020,615 - PS417_23160 0.30 -0.3 5,020,657 - PS417_23160 0.34 -0.7 5,021,439 - -0.2 5,021,895 - -0.1 5,021,923 - +1.9 5,021,925 - -0.1 5,022,145 - PS417_23170 0.89 +0.2 5,022,145 - PS417_23170 0.89 -0.0 5,022,159 - +0.6
Or see this region's nucleotide sequence