Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21275

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21270 and CA264_21275 are separated by 27 nucleotidesCA264_21275 and CA264_21280 are separated by 38 nucleotidesCA264_21280 and CA264_21285 are separated by 62 nucleotidesCA264_21285 and CA264_21290 are separated by 12 nucleotides CA264_21270: CA264_21270 - hypothetical protein, at 120,353 to 122,167 _21270 CA264_21275: CA264_21275 - hypothetical protein, at 122,195 to 122,824 _21275 CA264_21280: CA264_21280 - hypothetical protein, at 122,863 to 123,234 _21280 CA264_21285: CA264_21285 - hypothetical protein, at 123,297 to 123,764 _21285 CA264_21290: CA264_21290 - SCO family protein, at 123,777 to 124,433 _21290 Position (kb) 122 123Strain fitness (log2 ratio) -2 -1 0 1at 121.205 kb on - strand, within CA264_21270at 121.235 kb on - strand, within CA264_21270at 121.294 kb on + strand, within CA264_21270at 121.295 kb on - strand, within CA264_21270at 121.427 kb on - strand, within CA264_21270at 121.452 kb on + strand, within CA264_21270at 121.453 kb on - strand, within CA264_21270at 121.472 kb on - strand, within CA264_21270at 121.476 kb on - strand, within CA264_21270at 121.476 kb on - strand, within CA264_21270at 121.480 kb on - strand, within CA264_21270at 121.480 kb on - strand, within CA264_21270at 121.537 kb on - strand, within CA264_21270at 121.744 kb on - strand, within CA264_21270at 121.763 kb on + strand, within CA264_21270at 121.818 kb on - strand, within CA264_21270at 122.132 kb on - strandat 122.267 kb on - strand, within CA264_21275at 122.453 kb on + strand, within CA264_21275at 122.454 kb on - strand, within CA264_21275at 122.464 kb on - strand, within CA264_21275at 122.822 kb on + strandat 122.852 kb on - strandat 122.879 kb on + strandat 122.892 kb on + strandat 122.938 kb on - strand, within CA264_21280at 122.938 kb on - strand, within CA264_21280at 122.958 kb on - strand, within CA264_21280at 123.100 kb on + strand, within CA264_21280at 123.163 kb on - strand, within CA264_21280at 123.174 kb on - strand, within CA264_21280at 123.194 kb on - strand, within CA264_21280at 123.319 kb on - strandat 123.323 kb on - strandat 123.329 kb on + strandat 123.449 kb on - strand, within CA264_21285at 123.449 kb on - strand, within CA264_21285at 123.456 kb on - strand, within CA264_21285at 123.456 kb on - strand, within CA264_21285at 123.491 kb on - strand, within CA264_21285at 123.759 kb on - strandat 123.804 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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121,205 - CA264_21270 0.47 -0.2
121,235 - CA264_21270 0.49 -0.4
121,294 + CA264_21270 0.52 +1.1
121,295 - CA264_21270 0.52 -0.6
121,427 - CA264_21270 0.59 +0.7
121,452 + CA264_21270 0.61 -0.3
121,453 - CA264_21270 0.61 -0.0
121,472 - CA264_21270 0.62 +0.1
121,476 - CA264_21270 0.62 -0.9
121,476 - CA264_21270 0.62 -0.4
121,480 - CA264_21270 0.62 +0.0
121,480 - CA264_21270 0.62 -0.1
121,537 - CA264_21270 0.65 -0.4
121,744 - CA264_21270 0.77 -0.1
121,763 + CA264_21270 0.78 +1.1
121,818 - CA264_21270 0.81 -1.3
122,132 - -1.6
122,267 - CA264_21275 0.11 -1.6
122,453 + CA264_21275 0.41 -0.4
122,454 - CA264_21275 0.41 -1.0
122,464 - CA264_21275 0.43 -0.0
122,822 + +0.0
122,852 - -0.1
122,879 + -0.6
122,892 + -0.5
122,938 - CA264_21280 0.20 +0.2
122,938 - CA264_21280 0.20 +0.3
122,958 - CA264_21280 0.26 -1.0
123,100 + CA264_21280 0.64 -1.1
123,163 - CA264_21280 0.81 -0.0
123,174 - CA264_21280 0.84 +0.5
123,194 - CA264_21280 0.89 -0.1
123,319 - +0.5
123,323 - -0.1
123,329 + -1.8
123,449 - CA264_21285 0.32 +0.6
123,449 - CA264_21285 0.32 -0.3
123,456 - CA264_21285 0.34 +1.7
123,456 - CA264_21285 0.34 +0.1
123,491 - CA264_21285 0.41 +0.3
123,759 - -0.6
123,804 + -0.1

Or see this region's nucleotide sequence