Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20865

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20860 and CA264_20865 are separated by 221 nucleotidesCA264_20865 and CA264_20870 are separated by 130 nucleotides CA264_20860: CA264_20860 - site-specific DNA-methyltransferase, at 31,910 to 33,493 _20860 CA264_20865: CA264_20865 - restriction endonuclease, at 33,715 to 36,360 _20865 CA264_20870: CA264_20870 - addiction module protein, at 36,491 to 37,606 _20870 Position (kb) 33 34 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 32.753 kb on - strand, within CA264_20860at 32.753 kb on - strand, within CA264_20860at 32.754 kb on + strand, within CA264_20860at 32.881 kb on + strand, within CA264_20860at 32.887 kb on + strand, within CA264_20860at 32.887 kb on + strand, within CA264_20860at 32.893 kb on + strand, within CA264_20860at 32.893 kb on + strand, within CA264_20860at 32.894 kb on - strand, within CA264_20860at 32.916 kb on + strand, within CA264_20860at 33.051 kb on - strand, within CA264_20860at 33.051 kb on - strand, within CA264_20860at 33.113 kb on - strand, within CA264_20860at 33.121 kb on - strand, within CA264_20860at 33.143 kb on - strand, within CA264_20860at 33.146 kb on + strand, within CA264_20860at 33.147 kb on - strand, within CA264_20860at 33.147 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.152 kb on - strand, within CA264_20860at 33.225 kb on - strand, within CA264_20860at 33.234 kb on - strand, within CA264_20860at 33.281 kb on - strand, within CA264_20860at 33.357 kb on - strandat 33.395 kb on + strandat 33.395 kb on + strandat 33.404 kb on + strandat 33.449 kb on - strandat 33.479 kb on - strandat 33.530 kb on - strandat 33.540 kb on - strandat 33.540 kb on - strandat 33.542 kb on - strandat 33.542 kb on - strandat 33.545 kb on - strandat 33.623 kb on - strandat 33.623 kb on - strandat 33.713 kb on - strandat 33.722 kb on + strandat 33.730 kb on + strandat 33.731 kb on - strandat 33.731 kb on - strandat 33.811 kb on - strandat 33.838 kb on + strandat 33.838 kb on + strandat 33.861 kb on + strandat 33.879 kb on + strandat 33.939 kb on + strandat 34.004 kb on + strand, within CA264_20865at 34.053 kb on + strand, within CA264_20865at 34.117 kb on + strand, within CA264_20865at 34.118 kb on - strand, within CA264_20865at 34.118 kb on - strand, within CA264_20865at 34.279 kb on + strand, within CA264_20865at 34.280 kb on - strand, within CA264_20865at 34.280 kb on - strand, within CA264_20865at 34.281 kb on + strand, within CA264_20865at 34.282 kb on - strand, within CA264_20865at 34.308 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.358 kb on + strand, within CA264_20865at 34.364 kb on + strand, within CA264_20865at 34.365 kb on - strand, within CA264_20865at 34.470 kb on + strand, within CA264_20865at 34.492 kb on - strand, within CA264_20865at 34.538 kb on - strand, within CA264_20865at 34.637 kb on - strand, within CA264_20865at 34.640 kb on + strand, within CA264_20865at 34.641 kb on - strand, within CA264_20865at 34.701 kb on + strand, within CA264_20865at 34.727 kb on + strand, within CA264_20865at 34.728 kb on - strand, within CA264_20865at 34.755 kb on - strand, within CA264_20865at 34.830 kb on + strand, within CA264_20865at 34.831 kb on - strand, within CA264_20865at 34.833 kb on - strand, within CA264_20865at 34.870 kb on + strand, within CA264_20865at 34.874 kb on + strand, within CA264_20865at 34.875 kb on - strand, within CA264_20865at 34.875 kb on - strand, within CA264_20865at 34.877 kb on + strand, within CA264_20865at 34.878 kb on - strand, within CA264_20865at 34.949 kb on - strand, within CA264_20865at 34.988 kb on - strand, within CA264_20865at 35.014 kb on - strand, within CA264_20865at 35.032 kb on - strand, within CA264_20865at 35.205 kb on + strand, within CA264_20865at 35.206 kb on - strand, within CA264_20865at 35.206 kb on - strand, within CA264_20865at 35.206 kb on - strand, within CA264_20865at 35.210 kb on - strand, within CA264_20865at 35.221 kb on - strand, within CA264_20865at 35.229 kb on - strand, within CA264_20865at 35.367 kb on - strand, within CA264_20865at 35.442 kb on - strand, within CA264_20865at 35.488 kb on - strand, within CA264_20865at 35.505 kb on - strand, within CA264_20865at 35.535 kb on + strand, within CA264_20865at 35.536 kb on - strand, within CA264_20865at 35.536 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.570 kb on - strand, within CA264_20865at 35.643 kb on - strand, within CA264_20865at 35.737 kb on + strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.738 kb on - strand, within CA264_20865at 35.760 kb on - strand, within CA264_20865at 35.793 kb on - strand, within CA264_20865at 35.831 kb on - strand, within CA264_20865at 35.836 kb on + strand, within CA264_20865at 35.837 kb on - strand, within CA264_20865at 35.837 kb on - strand, within CA264_20865at 35.845 kb on - strand, within CA264_20865at 35.845 kb on - strand, within CA264_20865at 35.850 kb on - strand, within CA264_20865at 35.899 kb on - strand, within CA264_20865at 36.025 kb on - strand, within CA264_20865at 36.140 kb on - strandat 36.179 kb on + strandat 36.180 kb on - strandat 36.281 kb on - strandat 36.281 kb on - strandat 36.301 kb on - strandat 36.320 kb on - strandat 36.359 kb on - strandat 36.359 kb on - strandat 36.408 kb on - strandat 36.408 kb on - strandat 36.408 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.421 kb on - strandat 36.425 kb on - strandat 36.425 kb on - strandat 36.429 kb on - strandat 36.429 kb on - strandat 36.429 kb on - strandat 36.429 kb on - strandat 36.431 kb on - strandat 36.476 kb on - strandat 36.604 kb on + strand, within CA264_20870at 36.621 kb on + strand, within CA264_20870at 36.621 kb on + strand, within CA264_20870at 36.622 kb on - strand, within CA264_20870at 36.732 kb on + strand, within CA264_20870at 36.746 kb on - strand, within CA264_20870at 36.761 kb on + strand, within CA264_20870at 36.805 kb on + strand, within CA264_20870at 36.819 kb on + strand, within CA264_20870at 36.819 kb on + strand, within CA264_20870at 36.827 kb on - strand, within CA264_20870at 36.833 kb on - strand, within CA264_20870at 36.875 kb on - strand, within CA264_20870at 36.875 kb on - strand, within CA264_20870at 36.981 kb on - strand, within CA264_20870at 36.981 kb on - strand, within CA264_20870at 36.982 kb on + strand, within CA264_20870at 36.982 kb on + strand, within CA264_20870at 36.983 kb on - strand, within CA264_20870at 36.983 kb on - strand, within CA264_20870at 37.067 kb on + strand, within CA264_20870at 37.068 kb on - strand, within CA264_20870at 37.068 kb on - strand, within CA264_20870at 37.093 kb on + strand, within CA264_20870at 37.093 kb on + strand, within CA264_20870at 37.094 kb on - strand, within CA264_20870at 37.094 kb on - strand, within CA264_20870at 37.110 kb on - strand, within CA264_20870at 37.137 kb on + strand, within CA264_20870at 37.138 kb on - strand, within CA264_20870at 37.149 kb on - strand, within CA264_20870at 37.160 kb on + strand, within CA264_20870at 37.161 kb on - strand, within CA264_20870at 37.355 kb on + strand, within CA264_20870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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32,753 - CA264_20860 0.53 +0.0
32,753 - CA264_20860 0.53 -0.3
32,754 + CA264_20860 0.53 -0.9
32,881 + CA264_20860 0.61 -0.1
32,887 + CA264_20860 0.62 -1.2
32,887 + CA264_20860 0.62 -1.0
32,893 + CA264_20860 0.62 -2.1
32,893 + CA264_20860 0.62 -2.0
32,894 - CA264_20860 0.62 -0.1
32,916 + CA264_20860 0.64 -2.3
33,051 - CA264_20860 0.72 -0.6
33,051 - CA264_20860 0.72 -0.2
33,113 - CA264_20860 0.76 -0.7
33,121 - CA264_20860 0.76 -0.0
33,143 - CA264_20860 0.78 +1.2
33,146 + CA264_20860 0.78 -1.9
33,147 - CA264_20860 0.78 +0.2
33,147 - CA264_20860 0.78 +0.3
33,152 - CA264_20860 0.78 -0.3
33,152 - CA264_20860 0.78 +0.7
33,152 - CA264_20860 0.78 -0.7
33,225 - CA264_20860 0.83 -0.6
33,234 - CA264_20860 0.84 -1.6
33,281 - CA264_20860 0.87 -2.1
33,357 - +0.1
33,395 + -1.5
33,395 + -1.4
33,404 + -1.2
33,449 - -1.4
33,479 - -0.9
33,530 - -1.6
33,540 - -1.6
33,540 - -1.8
33,542 - -1.5
33,542 - +0.2
33,545 - -1.7
33,623 - +0.2
33,623 - -2.8
33,713 - +0.3
33,722 + -0.5
33,730 + +0.4
33,731 - -0.3
33,731 - +0.7
33,811 - +0.9
33,838 + +0.1
33,838 + -2.3
33,861 + -1.8
33,879 + +0.4
33,939 + -1.0
34,004 + CA264_20865 0.11 +0.5
34,053 + CA264_20865 0.13 -1.6
34,117 + CA264_20865 0.15 -0.1
34,118 - CA264_20865 0.15 +0.1
34,118 - CA264_20865 0.15 -0.1
34,279 + CA264_20865 0.21 +1.0
34,280 - CA264_20865 0.21 +0.0
34,280 - CA264_20865 0.21 -0.6
34,281 + CA264_20865 0.21 -1.6
34,282 - CA264_20865 0.21 -0.8
34,308 + CA264_20865 0.22 -3.1
34,358 + CA264_20865 0.24 -1.6
34,358 + CA264_20865 0.24 -0.6
34,358 + CA264_20865 0.24 -2.4
34,364 + CA264_20865 0.25 -3.0
34,365 - CA264_20865 0.25 -1.8
34,470 + CA264_20865 0.29 -2.0
34,492 - CA264_20865 0.29 -0.4
34,538 - CA264_20865 0.31 -1.1
34,637 - CA264_20865 0.35 -0.7
34,640 + CA264_20865 0.35 -2.0
34,641 - CA264_20865 0.35 -1.0
34,701 + CA264_20865 0.37 +0.1
34,727 + CA264_20865 0.38 -0.1
34,728 - CA264_20865 0.38 -3.0
34,755 - CA264_20865 0.39 -0.6
34,830 + CA264_20865 0.42 -0.1
34,831 - CA264_20865 0.42 +0.3
34,833 - CA264_20865 0.42 -1.4
34,870 + CA264_20865 0.44 -2.1
34,874 + CA264_20865 0.44 -2.1
34,875 - CA264_20865 0.44 -2.1
34,875 - CA264_20865 0.44 -0.1
34,877 + CA264_20865 0.44 -1.3
34,878 - CA264_20865 0.44 +0.8
34,949 - CA264_20865 0.47 -1.1
34,988 - CA264_20865 0.48 +0.0
35,014 - CA264_20865 0.49 -0.9
35,032 - CA264_20865 0.50 +0.4
35,205 + CA264_20865 0.56 -1.1
35,206 - CA264_20865 0.56 +0.9
35,206 - CA264_20865 0.56 +0.1
35,206 - CA264_20865 0.56 -1.2
35,210 - CA264_20865 0.57 -0.5
35,221 - CA264_20865 0.57 +0.1
35,229 - CA264_20865 0.57 -0.8
35,367 - CA264_20865 0.62 -2.2
35,442 - CA264_20865 0.65 -0.7
35,488 - CA264_20865 0.67 -0.7
35,505 - CA264_20865 0.68 -0.6
35,535 + CA264_20865 0.69 -0.9
35,536 - CA264_20865 0.69 -0.3
35,536 - CA264_20865 0.69 +1.4
35,570 - CA264_20865 0.70 -0.9
35,570 - CA264_20865 0.70 +0.2
35,570 - CA264_20865 0.70 -0.5
35,570 - CA264_20865 0.70 +1.0
35,643 - CA264_20865 0.73 -0.9
35,737 + CA264_20865 0.76 -2.8
35,738 - CA264_20865 0.76 -0.1
35,738 - CA264_20865 0.76 -0.2
35,738 - CA264_20865 0.76 -0.2
35,738 - CA264_20865 0.76 -0.1
35,760 - CA264_20865 0.77 -0.8
35,793 - CA264_20865 0.79 -1.5
35,831 - CA264_20865 0.80 +0.2
35,836 + CA264_20865 0.80 -1.6
35,837 - CA264_20865 0.80 -0.8
35,837 - CA264_20865 0.80 -1.0
35,845 - CA264_20865 0.80 +0.4
35,845 - CA264_20865 0.80 +0.1
35,850 - CA264_20865 0.81 -1.6
35,899 - CA264_20865 0.83 +0.2
36,025 - CA264_20865 0.87 -1.7
36,140 - -0.7
36,179 + -0.7
36,180 - +0.3
36,281 - -2.2
36,281 - -2.1
36,301 - -1.0
36,320 - -0.4
36,359 - -0.7
36,359 - +0.3
36,408 - +0.4
36,408 - -2.2
36,408 - -1.1
36,421 - -1.8
36,421 - -0.1
36,421 - +0.7
36,421 - -0.6
36,421 - -0.7
36,425 - -1.5
36,425 - -1.5
36,429 - -0.7
36,429 - -0.8
36,429 - -1.6
36,429 - -0.9
36,431 - +0.1
36,476 - +1.3
36,604 + CA264_20870 0.10 +0.3
36,621 + CA264_20870 0.12 -0.6
36,621 + CA264_20870 0.12 +0.2
36,622 - CA264_20870 0.12 -1.8
36,732 + CA264_20870 0.22 -0.4
36,746 - CA264_20870 0.23 +0.3
36,761 + CA264_20870 0.24 -0.2
36,805 + CA264_20870 0.28 +0.1
36,819 + CA264_20870 0.29 +1.9
36,819 + CA264_20870 0.29 -0.4
36,827 - CA264_20870 0.30 -0.7
36,833 - CA264_20870 0.31 +0.5
36,875 - CA264_20870 0.34 +0.1
36,875 - CA264_20870 0.34 +0.4
36,981 - CA264_20870 0.44 +0.2
36,981 - CA264_20870 0.44 -0.5
36,982 + CA264_20870 0.44 +0.0
36,982 + CA264_20870 0.44 -0.1
36,983 - CA264_20870 0.44 +0.6
36,983 - CA264_20870 0.44 -0.2
37,067 + CA264_20870 0.52 -0.6
37,068 - CA264_20870 0.52 +0.0
37,068 - CA264_20870 0.52 +0.1
37,093 + CA264_20870 0.54 -0.1
37,093 + CA264_20870 0.54 -1.0
37,094 - CA264_20870 0.54 +0.5
37,094 - CA264_20870 0.54 +0.3
37,110 - CA264_20870 0.55 -0.1
37,137 + CA264_20870 0.58 +0.7
37,138 - CA264_20870 0.58 +0.5
37,149 - CA264_20870 0.59 +1.1
37,160 + CA264_20870 0.60 -1.0
37,161 - CA264_20870 0.60 -0.7
37,355 + CA264_20870 0.77 +1.4

Or see this region's nucleotide sequence