Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19915 and CA264_19920 are separated by 140 nucleotides CA264_19920 and CA264_19925 are separated by 305 nucleotides CA264_19925 and CA264_19930 are separated by 2 nucleotides
CA264_19915: CA264_19915 - hydroxymethylbilane synthase, at 4,592,143 to 4,593,093
_19915
CA264_19920: CA264_19920 - alanine glycine permease, at 4,593,234 to 4,594,793
_19920
CA264_19925: CA264_19925 - peptidyl-prolyl cis-trans isomerase, at 4,595,099 to 4,595,749
_19925
CA264_19930: CA264_19930 - NAD(P)-dependent oxidoreductase, at 4,595,752 to 4,596,663
_19930
Position (kb)
4593
4594
4595 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4593.091 kb on + strand at 4593.096 kb on + strand at 4593.096 kb on + strand at 4593.096 kb on + strand at 4593.098 kb on + strand at 4593.122 kb on - strand at 4593.136 kb on + strand at 4593.139 kb on - strand at 4593.173 kb on - strand at 4593.173 kb on - strand at 4593.173 kb on - strand at 4593.173 kb on - strand at 4593.175 kb on + strand at 4593.221 kb on - strand at 4593.229 kb on - strand at 4593.230 kb on + strand at 4593.230 kb on + strand at 4593.230 kb on + strand at 4593.259 kb on - strand at 4593.301 kb on + strand at 4593.302 kb on - strand at 4593.349 kb on + strand at 4593.372 kb on - strand at 4593.523 kb on + strand, within CA264_19920 at 4593.526 kb on + strand, within CA264_19920 at 4593.599 kb on + strand, within CA264_19920 at 4593.623 kb on + strand, within CA264_19920 at 4593.658 kb on + strand, within CA264_19920 at 4593.658 kb on + strand, within CA264_19920 at 4593.659 kb on - strand, within CA264_19920 at 4593.659 kb on - strand, within CA264_19920 at 4593.675 kb on - strand, within CA264_19920 at 4593.695 kb on + strand, within CA264_19920 at 4593.696 kb on - strand, within CA264_19920 at 4593.696 kb on - strand, within CA264_19920 at 4593.714 kb on + strand, within CA264_19920 at 4593.714 kb on + strand, within CA264_19920 at 4593.714 kb on + strand, within CA264_19920 at 4593.716 kb on + strand, within CA264_19920 at 4593.761 kb on + strand, within CA264_19920 at 4593.762 kb on - strand, within CA264_19920 at 4593.840 kb on + strand, within CA264_19920 at 4593.869 kb on + strand, within CA264_19920 at 4593.869 kb on + strand, within CA264_19920 at 4593.964 kb on + strand, within CA264_19920 at 4594.124 kb on + strand, within CA264_19920 at 4594.221 kb on + strand, within CA264_19920 at 4594.222 kb on - strand, within CA264_19920 at 4594.261 kb on + strand, within CA264_19920 at 4594.262 kb on - strand, within CA264_19920 at 4594.431 kb on - strand, within CA264_19920 at 4594.510 kb on + strand, within CA264_19920 at 4594.511 kb on - strand, within CA264_19920 at 4594.570 kb on + strand, within CA264_19920 at 4594.571 kb on - strand, within CA264_19920 at 4594.571 kb on - strand, within CA264_19920 at 4594.571 kb on - strand, within CA264_19920 at 4594.637 kb on + strand, within CA264_19920 at 4594.638 kb on - strand at 4594.658 kb on + strand at 4594.670 kb on + strand at 4594.777 kb on - strand at 4594.795 kb on + strand at 4594.796 kb on - strand at 4594.796 kb on - strand at 4594.804 kb on + strand at 4594.805 kb on - strand at 4594.805 kb on - strand at 4594.961 kb on + strand at 4595.090 kb on + strand at 4595.090 kb on + strand at 4595.090 kb on + strand at 4595.090 kb on + strand at 4595.091 kb on - strand at 4595.091 kb on - strand at 4595.091 kb on - strand at 4595.094 kb on + strand at 4595.094 kb on + strand at 4595.094 kb on + strand at 4595.095 kb on - strand at 4595.095 kb on - strand at 4595.095 kb on - strand at 4595.098 kb on + strand at 4595.099 kb on - strand at 4595.116 kb on + strand at 4595.196 kb on + strand, within CA264_19925 at 4595.196 kb on + strand, within CA264_19925 at 4595.196 kb on + strand, within CA264_19925 at 4595.197 kb on - strand, within CA264_19925 at 4595.516 kb on + strand, within CA264_19925 at 4595.517 kb on - strand, within CA264_19925 at 4595.561 kb on + strand, within CA264_19925 at 4595.561 kb on + strand, within CA264_19925 at 4595.561 kb on + strand, within CA264_19925 at 4595.562 kb on - strand, within CA264_19925 at 4595.562 kb on - strand, within CA264_19925 at 4595.583 kb on + strand, within CA264_19925 at 4595.584 kb on - strand, within CA264_19925 at 4595.584 kb on - strand, within CA264_19925 at 4595.605 kb on + strand, within CA264_19925 at 4595.605 kb on + strand, within CA264_19925 at 4595.606 kb on - strand, within CA264_19925 at 4595.606 kb on - strand, within CA264_19925 at 4595.708 kb on + strand at 4595.708 kb on + strand at 4595.715 kb on - strand at 4595.716 kb on + strand at 4595.716 kb on + strand at 4595.717 kb on - strand at 4595.717 kb on - strand at 4595.720 kb on + strand at 4595.747 kb on + strand at 4595.748 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,593,091 + +1.3 4,593,096 + -0.2 4,593,096 + -0.7 4,593,096 + +0.6 4,593,098 + -0.1 4,593,122 - +0.1 4,593,136 + -0.3 4,593,139 - -1.6 4,593,173 - -0.8 4,593,173 - -2.2 4,593,173 - -0.4 4,593,173 - -4.1 4,593,175 + -0.4 4,593,221 - -1.5 4,593,229 - -0.3 4,593,230 + -1.7 4,593,230 + -0.8 4,593,230 + -1.4 4,593,259 - -2.2 4,593,301 + -1.5 4,593,302 - -1.3 4,593,349 + -1.9 4,593,372 - -1.1 4,593,523 + CA264_19920 0.19 -2.1 4,593,526 + CA264_19920 0.19 -1.2 4,593,599 + CA264_19920 0.23 -2.2 4,593,623 + CA264_19920 0.25 -1.6 4,593,658 + CA264_19920 0.27 -1.6 4,593,658 + CA264_19920 0.27 -2.8 4,593,659 - CA264_19920 0.27 -2.1 4,593,659 - CA264_19920 0.27 -0.9 4,593,675 - CA264_19920 0.28 -1.6 4,593,695 + CA264_19920 0.30 -1.1 4,593,696 - CA264_19920 0.30 -1.8 4,593,696 - CA264_19920 0.30 -1.7 4,593,714 + CA264_19920 0.31 +2.0 4,593,714 + CA264_19920 0.31 -1.0 4,593,714 + CA264_19920 0.31 -1.3 4,593,716 + CA264_19920 0.31 -0.6 4,593,761 + CA264_19920 0.34 -0.1 4,593,762 - CA264_19920 0.34 -1.6 4,593,840 + CA264_19920 0.39 +0.6 4,593,869 + CA264_19920 0.41 -0.1 4,593,869 + CA264_19920 0.41 +0.1 4,593,964 + CA264_19920 0.47 -0.4 4,594,124 + CA264_19920 0.57 -1.0 4,594,221 + CA264_19920 0.63 -1.2 4,594,222 - CA264_19920 0.63 -1.3 4,594,261 + CA264_19920 0.66 +0.4 4,594,262 - CA264_19920 0.66 -1.5 4,594,431 - CA264_19920 0.77 -1.6 4,594,510 + CA264_19920 0.82 +0.5 4,594,511 - CA264_19920 0.82 -1.1 4,594,570 + CA264_19920 0.86 -0.2 4,594,571 - CA264_19920 0.86 -0.4 4,594,571 - CA264_19920 0.86 -0.6 4,594,571 - CA264_19920 0.86 +0.4 4,594,637 + CA264_19920 0.90 -0.5 4,594,638 - -1.1 4,594,658 + +0.4 4,594,670 + -2.9 4,594,777 - -2.0 4,594,795 + -0.6 4,594,796 - -0.2 4,594,796 - -0.9 4,594,804 + +0.3 4,594,805 - -0.3 4,594,805 - +0.4 4,594,961 + -0.6 4,595,090 + +0.2 4,595,090 + +1.2 4,595,090 + +1.5 4,595,090 + -0.5 4,595,091 - -0.4 4,595,091 - +0.5 4,595,091 - +0.2 4,595,094 + +0.5 4,595,094 + +0.3 4,595,094 + +0.2 4,595,095 - +0.4 4,595,095 - +0.8 4,595,095 - -0.9 4,595,098 + +1.9 4,595,099 - -1.2 4,595,116 + +1.0 4,595,196 + CA264_19925 0.15 +0.1 4,595,196 + CA264_19925 0.15 -0.4 4,595,196 + CA264_19925 0.15 +0.0 4,595,197 - CA264_19925 0.15 -1.3 4,595,516 + CA264_19925 0.64 +1.0 4,595,517 - CA264_19925 0.64 +0.4 4,595,561 + CA264_19925 0.71 -0.2 4,595,561 + CA264_19925 0.71 +0.3 4,595,561 + CA264_19925 0.71 -0.2 4,595,562 - CA264_19925 0.71 -1.1 4,595,562 - CA264_19925 0.71 -1.1 4,595,583 + CA264_19925 0.74 -3.3 4,595,584 - CA264_19925 0.75 -0.9 4,595,584 - CA264_19925 0.75 -0.8 4,595,605 + CA264_19925 0.78 +1.3 4,595,605 + CA264_19925 0.78 -0.2 4,595,606 - CA264_19925 0.78 -0.1 4,595,606 - CA264_19925 0.78 +0.1 4,595,708 + +0.7 4,595,708 + -1.0 4,595,715 - -0.3 4,595,716 + +0.3 4,595,716 + +1.5 4,595,717 - -0.1 4,595,717 - +0.8 4,595,720 + +0.9 4,595,747 + -0.3 4,595,748 - +0.1
Or see this region's nucleotide sequence