Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19640

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19630 and CA264_19635 are separated by 39 nucleotidesCA264_19635 and CA264_19640 are separated by 62 nucleotidesCA264_19640 and CA264_19645 are separated by 78 nucleotides CA264_19630: CA264_19630 - hypothetical protein, at 4,535,049 to 4,535,291 _19630 CA264_19635: CA264_19635 - hypothetical protein, at 4,535,331 to 4,536,194 _19635 CA264_19640: CA264_19640 - TraB/GumN family protein, at 4,536,257 to 4,536,982 _19640 CA264_19645: CA264_19645 - IS256 family transposase, at 4,537,061 to 4,538,284 _19645 Position (kb) 4536 4537Strain fitness (log2 ratio) -2 -1 0 1 2at 4535.266 kb on + strand, within CA264_19630at 4535.270 kb on + strandat 4535.271 kb on - strandat 4535.323 kb on - strandat 4535.323 kb on - strandat 4535.325 kb on + strandat 4535.326 kb on - strandat 4535.326 kb on - strandat 4535.339 kb on - strandat 4535.343 kb on - strandat 4535.343 kb on - strandat 4535.346 kb on + strandat 4535.347 kb on - strandat 4535.350 kb on + strandat 4535.351 kb on - strandat 4535.363 kb on + strandat 4535.372 kb on + strandat 4535.393 kb on - strandat 4535.393 kb on - strandat 4535.433 kb on - strand, within CA264_19635at 4535.480 kb on - strand, within CA264_19635at 4535.490 kb on + strand, within CA264_19635at 4535.490 kb on + strand, within CA264_19635at 4535.491 kb on - strand, within CA264_19635at 4535.519 kb on + strand, within CA264_19635at 4535.530 kb on + strand, within CA264_19635at 4535.606 kb on + strand, within CA264_19635at 4535.607 kb on - strand, within CA264_19635at 4535.613 kb on - strand, within CA264_19635at 4535.613 kb on - strand, within CA264_19635at 4535.756 kb on + strand, within CA264_19635at 4535.785 kb on + strand, within CA264_19635at 4535.785 kb on + strand, within CA264_19635at 4535.808 kb on - strand, within CA264_19635at 4535.820 kb on + strand, within CA264_19635at 4535.891 kb on + strand, within CA264_19635at 4535.892 kb on - strand, within CA264_19635at 4535.906 kb on + strand, within CA264_19635at 4535.906 kb on + strand, within CA264_19635at 4535.907 kb on - strand, within CA264_19635at 4535.907 kb on - strand, within CA264_19635at 4535.954 kb on + strand, within CA264_19635at 4535.955 kb on - strand, within CA264_19635at 4535.958 kb on + strand, within CA264_19635at 4535.959 kb on - strand, within CA264_19635at 4536.000 kb on + strand, within CA264_19635at 4536.000 kb on + strand, within CA264_19635at 4536.000 kb on + strand, within CA264_19635at 4536.001 kb on - strand, within CA264_19635at 4536.026 kb on + strand, within CA264_19635at 4536.027 kb on - strand, within CA264_19635at 4536.027 kb on - strand, within CA264_19635at 4536.041 kb on - strand, within CA264_19635at 4536.202 kb on + strandat 4536.213 kb on - strandat 4536.213 kb on - strandat 4536.247 kb on - strandat 4536.389 kb on - strand, within CA264_19640at 4536.389 kb on - strand, within CA264_19640at 4536.420 kb on + strand, within CA264_19640at 4536.420 kb on + strand, within CA264_19640at 4536.421 kb on - strand, within CA264_19640at 4536.423 kb on + strand, within CA264_19640at 4536.423 kb on + strand, within CA264_19640at 4536.524 kb on - strand, within CA264_19640at 4536.524 kb on - strand, within CA264_19640at 4536.541 kb on - strand, within CA264_19640at 4536.623 kb on - strand, within CA264_19640at 4536.624 kb on + strand, within CA264_19640at 4536.625 kb on - strand, within CA264_19640at 4536.658 kb on - strand, within CA264_19640at 4536.697 kb on + strand, within CA264_19640at 4536.698 kb on - strand, within CA264_19640at 4536.701 kb on - strand, within CA264_19640at 4536.717 kb on + strand, within CA264_19640at 4536.736 kb on - strand, within CA264_19640at 4536.747 kb on - strand, within CA264_19640at 4536.767 kb on + strand, within CA264_19640at 4536.767 kb on + strand, within CA264_19640at 4536.787 kb on - strand, within CA264_19640at 4536.791 kb on - strand, within CA264_19640at 4536.819 kb on + strand, within CA264_19640at 4536.822 kb on + strand, within CA264_19640at 4536.822 kb on + strand, within CA264_19640at 4536.849 kb on + strand, within CA264_19640at 4536.931 kb on - strandat 4536.956 kb on + strandat 4536.959 kb on - strandat 4536.959 kb on - strandat 4536.978 kb on + strandat 4536.980 kb on + strandat 4537.033 kb on + strandat 4537.037 kb on - strandat 4537.039 kb on + strandat 4537.040 kb on - strandat 4537.403 kb on + strand, within CA264_19645at 4537.455 kb on - strand, within CA264_19645at 4537.455 kb on - strand, within CA264_19645at 4537.580 kb on + strand, within CA264_19645at 4537.674 kb on - strand, within CA264_19645at 4537.674 kb on - strand, within CA264_19645at 4537.747 kb on + strand, within CA264_19645at 4537.748 kb on - strand, within CA264_19645at 4537.748 kb on - strand, within CA264_19645at 4537.822 kb on - strand, within CA264_19645at 4537.863 kb on - strand, within CA264_19645at 4537.863 kb on - strand, within CA264_19645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,535,266 + CA264_19630 0.89 -0.2
4,535,270 + -0.7
4,535,271 - -1.3
4,535,323 - -0.5
4,535,323 - -0.0
4,535,325 + -0.9
4,535,326 - -0.5
4,535,326 - +0.3
4,535,339 - +0.4
4,535,343 - -0.5
4,535,343 - +2.3
4,535,346 + -0.3
4,535,347 - +0.3
4,535,350 + -0.3
4,535,351 - -0.2
4,535,363 + +0.3
4,535,372 + +0.7
4,535,393 - -0.4
4,535,393 - -0.1
4,535,433 - CA264_19635 0.12 +0.1
4,535,480 - CA264_19635 0.17 +0.1
4,535,490 + CA264_19635 0.18 -0.1
4,535,490 + CA264_19635 0.18 -1.5
4,535,491 - CA264_19635 0.19 +0.4
4,535,519 + CA264_19635 0.22 +0.5
4,535,530 + CA264_19635 0.23 -0.1
4,535,606 + CA264_19635 0.32 -0.7
4,535,607 - CA264_19635 0.32 -0.3
4,535,613 - CA264_19635 0.33 -0.2
4,535,613 - CA264_19635 0.33 -1.0
4,535,756 + CA264_19635 0.49 -0.8
4,535,785 + CA264_19635 0.53 +0.6
4,535,785 + CA264_19635 0.53 -0.1
4,535,808 - CA264_19635 0.55 +0.2
4,535,820 + CA264_19635 0.57 -0.1
4,535,891 + CA264_19635 0.65 -0.1
4,535,892 - CA264_19635 0.65 -0.1
4,535,906 + CA264_19635 0.67 -0.6
4,535,906 + CA264_19635 0.67 +0.9
4,535,907 - CA264_19635 0.67 +1.0
4,535,907 - CA264_19635 0.67 +1.6
4,535,954 + CA264_19635 0.72 -0.8
4,535,955 - CA264_19635 0.72 +0.1
4,535,958 + CA264_19635 0.73 +1.1
4,535,959 - CA264_19635 0.73 -0.2
4,536,000 + CA264_19635 0.77 -0.7
4,536,000 + CA264_19635 0.77 +0.4
4,536,000 + CA264_19635 0.77 +0.8
4,536,001 - CA264_19635 0.78 +0.3
4,536,026 + CA264_19635 0.80 +0.3
4,536,027 - CA264_19635 0.81 +1.2
4,536,027 - CA264_19635 0.81 -0.1
4,536,041 - CA264_19635 0.82 -0.5
4,536,202 + +0.8
4,536,213 - +0.1
4,536,213 - +0.4
4,536,247 - +0.3
4,536,389 - CA264_19640 0.18 -0.7
4,536,389 - CA264_19640 0.18 -0.5
4,536,420 + CA264_19640 0.22 -0.8
4,536,420 + CA264_19640 0.22 +0.2
4,536,421 - CA264_19640 0.23 -0.2
4,536,423 + CA264_19640 0.23 -0.4
4,536,423 + CA264_19640 0.23 -0.6
4,536,524 - CA264_19640 0.37 -2.6
4,536,524 - CA264_19640 0.37 -0.3
4,536,541 - CA264_19640 0.39 -1.6
4,536,623 - CA264_19640 0.50 -0.1
4,536,624 + CA264_19640 0.51 +0.1
4,536,625 - CA264_19640 0.51 +0.8
4,536,658 - CA264_19640 0.55 -0.0
4,536,697 + CA264_19640 0.61 -1.5
4,536,698 - CA264_19640 0.61 +0.2
4,536,701 - CA264_19640 0.61 -0.6
4,536,717 + CA264_19640 0.63 -0.6
4,536,736 - CA264_19640 0.66 -0.6
4,536,747 - CA264_19640 0.67 +0.6
4,536,767 + CA264_19640 0.70 -0.7
4,536,767 + CA264_19640 0.70 +0.1
4,536,787 - CA264_19640 0.73 -0.4
4,536,791 - CA264_19640 0.74 -0.4
4,536,819 + CA264_19640 0.77 +0.0
4,536,822 + CA264_19640 0.78 -0.4
4,536,822 + CA264_19640 0.78 -0.3
4,536,849 + CA264_19640 0.82 -2.0
4,536,931 - -0.1
4,536,956 + -0.3
4,536,959 - +0.2
4,536,959 - -1.1
4,536,978 + +0.5
4,536,980 + -0.8
4,537,033 + +1.8
4,537,037 - +0.6
4,537,039 + -1.2
4,537,040 - +0.3
4,537,403 + CA264_19645 0.28 -0.2
4,537,455 - CA264_19645 0.32 +0.8
4,537,455 - CA264_19645 0.32 +0.2
4,537,580 + CA264_19645 0.42 -0.2
4,537,674 - CA264_19645 0.50 -0.6
4,537,674 - CA264_19645 0.50 +0.8
4,537,747 + CA264_19645 0.56 +0.0
4,537,748 - CA264_19645 0.56 -0.9
4,537,748 - CA264_19645 0.56 +1.3
4,537,822 - CA264_19645 0.62 -0.1
4,537,863 - CA264_19645 0.66 +0.6
4,537,863 - CA264_19645 0.66 -1.1

Or see this region's nucleotide sequence