Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19145

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19130 and CA264_19135 are separated by 51 nucleotidesCA264_19135 and CA264_19140 are separated by 47 nucleotidesCA264_19140 and CA264_19145 are separated by 73 nucleotidesCA264_19145 and CA264_19150 are separated by 22 nucleotides CA264_19130: CA264_19130 - DUF2798 domain-containing protein, at 4,446,964 to 4,447,191 _19130 CA264_19135: CA264_19135 - hypothetical protein, at 4,447,243 to 4,447,527 _19135 CA264_19140: CA264_19140 - hypothetical protein, at 4,447,575 to 4,447,883 _19140 CA264_19145: CA264_19145 - hypothetical protein, at 4,447,957 to 4,449,057 _19145 CA264_19150: CA264_19150 - TonB dependent receptor, at 4,449,080 to 4,450,996 _19150 Position (kb) 4447 4448 4449 4450Strain fitness (log2 ratio) -1 0 1 2at 4446.965 kb on + strandat 4446.992 kb on + strand, within CA264_19130at 4446.992 kb on + strand, within CA264_19130at 4446.993 kb on - strand, within CA264_19130at 4446.993 kb on - strand, within CA264_19130at 4447.098 kb on + strand, within CA264_19130at 4447.098 kb on + strand, within CA264_19130at 4447.100 kb on + strand, within CA264_19130at 4447.441 kb on + strand, within CA264_19135at 4447.451 kb on + strand, within CA264_19135at 4447.453 kb on - strand, within CA264_19135at 4447.505 kb on + strandat 4447.505 kb on + strandat 4447.510 kb on - strandat 4447.575 kb on - strandat 4447.595 kb on + strandat 4447.596 kb on - strandat 4447.597 kb on + strandat 4447.597 kb on + strandat 4447.598 kb on - strandat 4447.598 kb on - strandat 4447.601 kb on + strandat 4447.601 kb on + strandat 4447.601 kb on + strandat 4447.607 kb on - strand, within CA264_19140at 4447.607 kb on - strand, within CA264_19140at 4447.715 kb on - strand, within CA264_19140at 4447.737 kb on - strand, within CA264_19140at 4447.770 kb on + strand, within CA264_19140at 4447.771 kb on - strand, within CA264_19140at 4447.771 kb on - strand, within CA264_19140at 4447.774 kb on - strand, within CA264_19140at 4447.837 kb on - strand, within CA264_19140at 4447.837 kb on - strand, within CA264_19140at 4447.882 kb on - strandat 4447.882 kb on - strandat 4447.901 kb on - strandat 4447.958 kb on + strandat 4447.996 kb on - strandat 4448.033 kb on + strandat 4448.033 kb on + strandat 4448.034 kb on - strandat 4448.034 kb on - strandat 4448.034 kb on - strandat 4448.075 kb on + strand, within CA264_19145at 4448.075 kb on + strand, within CA264_19145at 4448.076 kb on - strand, within CA264_19145at 4448.076 kb on - strand, within CA264_19145at 4448.076 kb on - strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.079 kb on + strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.081 kb on + strand, within CA264_19145at 4448.112 kb on - strand, within CA264_19145at 4448.171 kb on + strand, within CA264_19145at 4448.186 kb on + strand, within CA264_19145at 4448.190 kb on + strand, within CA264_19145at 4448.192 kb on + strand, within CA264_19145at 4448.192 kb on + strand, within CA264_19145at 4448.195 kb on + strand, within CA264_19145at 4448.195 kb on + strand, within CA264_19145at 4448.196 kb on - strand, within CA264_19145at 4448.261 kb on + strand, within CA264_19145at 4448.262 kb on - strand, within CA264_19145at 4448.332 kb on + strand, within CA264_19145at 4448.333 kb on - strand, within CA264_19145at 4448.494 kb on + strand, within CA264_19145at 4448.502 kb on - strand, within CA264_19145at 4448.502 kb on - strand, within CA264_19145at 4448.515 kb on + strand, within CA264_19145at 4448.516 kb on - strand, within CA264_19145at 4448.570 kb on + strand, within CA264_19145at 4448.631 kb on - strand, within CA264_19145at 4448.668 kb on + strand, within CA264_19145at 4448.705 kb on - strand, within CA264_19145at 4448.751 kb on + strand, within CA264_19145at 4448.752 kb on - strand, within CA264_19145at 4448.772 kb on + strand, within CA264_19145at 4448.790 kb on - strand, within CA264_19145at 4448.802 kb on - strand, within CA264_19145at 4448.858 kb on - strand, within CA264_19145at 4448.869 kb on - strand, within CA264_19145at 4448.890 kb on - strand, within CA264_19145at 4449.069 kb on + strandat 4449.069 kb on + strandat 4449.069 kb on + strandat 4449.070 kb on - strandat 4449.070 kb on - strandat 4449.070 kb on - strandat 4449.074 kb on + strandat 4449.076 kb on + strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.082 kb on - strandat 4449.091 kb on + strandat 4449.110 kb on - strandat 4449.110 kb on - strandat 4449.111 kb on + strandat 4449.111 kb on + strandat 4449.297 kb on + strand, within CA264_19150at 4449.297 kb on + strand, within CA264_19150at 4449.435 kb on + strand, within CA264_19150at 4449.435 kb on + strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.440 kb on - strand, within CA264_19150at 4449.441 kb on + strand, within CA264_19150at 4449.441 kb on + strand, within CA264_19150at 4449.442 kb on - strand, within CA264_19150at 4449.464 kb on + strand, within CA264_19150at 4449.545 kb on + strand, within CA264_19150at 4449.597 kb on + strand, within CA264_19150at 4449.638 kb on + strand, within CA264_19150at 4449.848 kb on + strand, within CA264_19150at 4449.849 kb on - strand, within CA264_19150at 4449.952 kb on - strand, within CA264_19150at 4450.023 kb on + strand, within CA264_19150at 4450.023 kb on + strand, within CA264_19150at 4450.047 kb on + strand, within CA264_19150

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,446,965 + +1.1
4,446,992 + CA264_19130 0.12 -0.6
4,446,992 + CA264_19130 0.12 +0.3
4,446,993 - CA264_19130 0.13 -0.2
4,446,993 - CA264_19130 0.13 -0.2
4,447,098 + CA264_19130 0.59 +0.3
4,447,098 + CA264_19130 0.59 +0.5
4,447,100 + CA264_19130 0.60 +0.3
4,447,441 + CA264_19135 0.69 +0.5
4,447,451 + CA264_19135 0.73 -1.6
4,447,453 - CA264_19135 0.74 +0.1
4,447,505 + +0.3
4,447,505 + +1.1
4,447,510 - +0.4
4,447,575 - +0.4
4,447,595 + +1.4
4,447,596 - +0.3
4,447,597 + -0.2
4,447,597 + -0.5
4,447,598 - -0.1
4,447,598 - +0.0
4,447,601 + -0.3
4,447,601 + -0.1
4,447,601 + +0.0
4,447,607 - CA264_19140 0.10 -0.5
4,447,607 - CA264_19140 0.10 +1.0
4,447,715 - CA264_19140 0.45 -0.1
4,447,737 - CA264_19140 0.52 +0.0
4,447,770 + CA264_19140 0.63 -0.0
4,447,771 - CA264_19140 0.63 +0.0
4,447,771 - CA264_19140 0.63 -0.1
4,447,774 - CA264_19140 0.64 -0.4
4,447,837 - CA264_19140 0.85 -0.5
4,447,837 - CA264_19140 0.85 -0.3
4,447,882 - -0.1
4,447,882 - -0.3
4,447,901 - -0.6
4,447,958 + +0.4
4,447,996 - -0.1
4,448,033 + +0.9
4,448,033 + +0.9
4,448,034 - +0.5
4,448,034 - +0.2
4,448,034 - +0.0
4,448,075 + CA264_19145 0.11 +0.7
4,448,075 + CA264_19145 0.11 +0.2
4,448,076 - CA264_19145 0.11 -0.8
4,448,076 - CA264_19145 0.11 +0.2
4,448,076 - CA264_19145 0.11 +0.5
4,448,079 + CA264_19145 0.11 +0.5
4,448,079 + CA264_19145 0.11 +0.7
4,448,079 + CA264_19145 0.11 +0.7
4,448,079 + CA264_19145 0.11 +0.1
4,448,079 + CA264_19145 0.11 +0.4
4,448,079 + CA264_19145 0.11 +1.0
4,448,079 + CA264_19145 0.11 +1.0
4,448,080 - CA264_19145 0.11 +0.7
4,448,080 - CA264_19145 0.11 +0.0
4,448,080 - CA264_19145 0.11 +1.1
4,448,080 - CA264_19145 0.11 +0.6
4,448,081 + CA264_19145 0.11 +0.6
4,448,112 - CA264_19145 0.14 +0.9
4,448,171 + CA264_19145 0.19 +0.7
4,448,186 + CA264_19145 0.21 +0.3
4,448,190 + CA264_19145 0.21 +0.7
4,448,192 + CA264_19145 0.21 +0.5
4,448,192 + CA264_19145 0.21 +0.5
4,448,195 + CA264_19145 0.22 +2.2
4,448,195 + CA264_19145 0.22 -1.3
4,448,196 - CA264_19145 0.22 +1.1
4,448,261 + CA264_19145 0.28 -1.6
4,448,262 - CA264_19145 0.28 +1.1
4,448,332 + CA264_19145 0.34 +1.3
4,448,333 - CA264_19145 0.34 +0.4
4,448,494 + CA264_19145 0.49 +1.5
4,448,502 - CA264_19145 0.50 -0.0
4,448,502 - CA264_19145 0.50 +1.0
4,448,515 + CA264_19145 0.51 +1.2
4,448,516 - CA264_19145 0.51 -0.9
4,448,570 + CA264_19145 0.56 -1.0
4,448,631 - CA264_19145 0.61 +0.4
4,448,668 + CA264_19145 0.65 -0.6
4,448,705 - CA264_19145 0.68 +1.4
4,448,751 + CA264_19145 0.72 -0.4
4,448,752 - CA264_19145 0.72 +1.1
4,448,772 + CA264_19145 0.74 +0.4
4,448,790 - CA264_19145 0.76 +0.5
4,448,802 - CA264_19145 0.77 +0.3
4,448,858 - CA264_19145 0.82 -0.1
4,448,869 - CA264_19145 0.83 +0.4
4,448,890 - CA264_19145 0.85 +0.9
4,449,069 + +0.4
4,449,069 + -0.4
4,449,069 + +0.5
4,449,070 - -0.3
4,449,070 - -0.2
4,449,070 - +0.1
4,449,074 + -0.2
4,449,076 + +0.4
4,449,077 - -0.9
4,449,077 - -0.6
4,449,077 - +0.4
4,449,077 - -0.0
4,449,077 - -0.2
4,449,082 - -0.7
4,449,091 + +1.4
4,449,110 - +1.1
4,449,110 - +0.9
4,449,111 + +0.9
4,449,111 + +1.3
4,449,297 + CA264_19150 0.11 +0.6
4,449,297 + CA264_19150 0.11 +1.1
4,449,435 + CA264_19150 0.19 -0.2
4,449,435 + CA264_19150 0.19 +0.8
4,449,436 - CA264_19150 0.19 +0.9
4,449,436 - CA264_19150 0.19 +0.7
4,449,436 - CA264_19150 0.19 +1.7
4,449,436 - CA264_19150 0.19 +1.5
4,449,440 - CA264_19150 0.19 +1.8
4,449,441 + CA264_19150 0.19 +0.2
4,449,441 + CA264_19150 0.19 +1.1
4,449,442 - CA264_19150 0.19 +1.0
4,449,464 + CA264_19150 0.20 +0.7
4,449,545 + CA264_19150 0.24 +1.1
4,449,597 + CA264_19150 0.27 +2.1
4,449,638 + CA264_19150 0.29 +0.6
4,449,848 + CA264_19150 0.40 +0.8
4,449,849 - CA264_19150 0.40 +1.2
4,449,952 - CA264_19150 0.45 +1.7
4,450,023 + CA264_19150 0.49 -0.2
4,450,023 + CA264_19150 0.49 +1.7
4,450,047 + CA264_19150 0.50 +0.3

Or see this region's nucleotide sequence