Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19035

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19025 and CA264_19030 are separated by 121 nucleotidesCA264_19030 and CA264_19035 are separated by 24 nucleotidesCA264_19035 and CA264_19040 are separated by 71 nucleotidesCA264_19040 and CA264_19045 are separated by 149 nucleotides CA264_19025: CA264_19025 - methionine adenosyltransferase, at 4,423,413 to 4,424,717 _19025 CA264_19030: CA264_19030 - ribosomal subunit interface protein, at 4,424,839 to 4,425,138 _19030 CA264_19035: CA264_19035 - integrase, at 4,425,163 to 4,426,041 _19035 CA264_19040: CA264_19040 - 30S ribosomal protein S21, at 4,426,113 to 4,426,307 _19040 CA264_19045: CA264_19045 - acyl-CoA dehydrogenase, at 4,426,457 to 4,427,596 _19045 Position (kb) 4425 4426 4427Strain fitness (log2 ratio) -1 0 1at 4424.734 kb on - strandat 4424.735 kb on + strandat 4424.754 kb on + strandat 4424.760 kb on + strandat 4424.779 kb on + strandat 4424.784 kb on + strandat 4424.817 kb on + strandat 4424.950 kb on - strand, within CA264_19030at 4424.971 kb on - strand, within CA264_19030at 4424.971 kb on - strand, within CA264_19030at 4425.009 kb on + strand, within CA264_19030at 4425.037 kb on + strand, within CA264_19030at 4425.047 kb on + strand, within CA264_19030at 4425.047 kb on + strand, within CA264_19030at 4425.048 kb on - strand, within CA264_19030at 4425.048 kb on - strand, within CA264_19030at 4425.130 kb on + strandat 4425.131 kb on - strandat 4425.131 kb on - strandat 4425.165 kb on - strandat 4426.112 kb on - strandat 4426.112 kb on - strandat 4426.115 kb on - strandat 4426.458 kb on + strandat 4426.480 kb on + strandat 4426.481 kb on - strandat 4426.493 kb on + strandat 4426.540 kb on - strandat 4426.543 kb on - strandat 4426.543 kb on - strandat 4426.699 kb on - strand, within CA264_19045at 4426.703 kb on - strand, within CA264_19045at 4426.867 kb on + strand, within CA264_19045

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,424,734 - +0.4
4,424,735 + +0.3
4,424,754 + -0.2
4,424,760 + +1.2
4,424,779 + -0.1
4,424,784 + +0.7
4,424,817 + -1.0
4,424,950 - CA264_19030 0.37 +1.2
4,424,971 - CA264_19030 0.44 +1.2
4,424,971 - CA264_19030 0.44 -0.8
4,425,009 + CA264_19030 0.57 +0.2
4,425,037 + CA264_19030 0.66 +0.2
4,425,047 + CA264_19030 0.69 +0.8
4,425,047 + CA264_19030 0.69 -0.0
4,425,048 - CA264_19030 0.70 +0.7
4,425,048 - CA264_19030 0.70 +0.3
4,425,130 + -0.2
4,425,131 - -0.5
4,425,131 - -1.1
4,425,165 - +0.8
4,426,112 - -0.2
4,426,112 - +0.1
4,426,115 - -0.2
4,426,458 + -0.1
4,426,480 + +0.1
4,426,481 - -0.5
4,426,493 + +0.2
4,426,540 - +1.1
4,426,543 - -0.3
4,426,543 - +0.8
4,426,699 - CA264_19045 0.21 -0.3
4,426,703 - CA264_19045 0.22 +0.3
4,426,867 + CA264_19045 0.36 -1.2

Or see this region's nucleotide sequence