Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18800

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18795 and CA264_18800 are separated by 0 nucleotidesCA264_18800 and CA264_18805 are separated by 82 nucleotidesCA264_18805 and CA264_18810 are separated by 14 nucleotides CA264_18795: CA264_18795 - hypothetical protein, at 4,363,448 to 4,365,772 _18795 CA264_18800: CA264_18800 - DNA repair protein RecO, at 4,365,773 to 4,366,486 _18800 CA264_18805: CA264_18805 - hypothetical protein, at 4,366,569 to 4,367,081 _18805 CA264_18810: CA264_18810 - hypothetical protein, at 4,367,096 to 4,368,058 _18810 Position (kb) 4365 4366 4367Strain fitness (log2 ratio) -2 -1 0 1at 4364.777 kb on - strand, within CA264_18795at 4364.982 kb on - strand, within CA264_18795at 4365.116 kb on + strand, within CA264_18795at 4365.179 kb on + strand, within CA264_18795at 4365.183 kb on - strand, within CA264_18795at 4365.183 kb on - strand, within CA264_18795at 4365.236 kb on - strand, within CA264_18795at 4365.237 kb on + strand, within CA264_18795at 4365.548 kb on + strandat 4365.602 kb on - strandat 4365.626 kb on + strandat 4365.626 kb on + strandat 4365.627 kb on - strandat 4365.628 kb on + strandat 4365.709 kb on - strandat 4365.712 kb on + strandat 4365.712 kb on + strandat 4365.713 kb on - strandat 4365.745 kb on + strandat 4365.770 kb on + strandat 4365.770 kb on + strandat 4365.778 kb on - strandat 4365.799 kb on - strandat 4365.799 kb on - strandat 4365.815 kb on + strandat 4365.815 kb on + strandat 4365.844 kb on - strandat 4365.845 kb on + strand, within CA264_18800at 4365.956 kb on + strand, within CA264_18800at 4365.956 kb on + strand, within CA264_18800at 4365.956 kb on + strand, within CA264_18800at 4365.957 kb on - strand, within CA264_18800at 4365.957 kb on - strand, within CA264_18800at 4365.957 kb on - strand, within CA264_18800at 4365.959 kb on - strand, within CA264_18800at 4366.555 kb on + strandat 4366.571 kb on - strandat 4366.723 kb on - strand, within CA264_18805at 4366.734 kb on - strand, within CA264_18805at 4366.734 kb on - strand, within CA264_18805at 4366.734 kb on - strand, within CA264_18805at 4366.737 kb on + strand, within CA264_18805at 4366.738 kb on - strand, within CA264_18805at 4366.778 kb on - strand, within CA264_18805at 4366.825 kb on - strand, within CA264_18805at 4366.825 kb on - strand, within CA264_18805at 4366.862 kb on + strand, within CA264_18805at 4366.882 kb on + strand, within CA264_18805at 4366.919 kb on + strand, within CA264_18805at 4367.071 kb on + strandat 4367.071 kb on + strandat 4367.072 kb on - strandat 4367.072 kb on - strandat 4367.093 kb on + strandat 4367.094 kb on - strandat 4367.094 kb on - strandat 4367.141 kb on - strandat 4367.361 kb on + strand, within CA264_18810at 4367.361 kb on + strand, within CA264_18810at 4367.366 kb on + strand, within CA264_18810at 4367.366 kb on + strand, within CA264_18810at 4367.417 kb on + strand, within CA264_18810at 4367.425 kb on - strand, within CA264_18810at 4367.479 kb on - strand, within CA264_18810at 4367.479 kb on - strand, within CA264_18810

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,364,777 - CA264_18795 0.57 -0.4
4,364,982 - CA264_18795 0.66 +0.4
4,365,116 + CA264_18795 0.72 +0.2
4,365,179 + CA264_18795 0.74 +1.6
4,365,183 - CA264_18795 0.75 -0.8
4,365,183 - CA264_18795 0.75 +0.4
4,365,236 - CA264_18795 0.77 -0.4
4,365,237 + CA264_18795 0.77 +0.4
4,365,548 + -0.7
4,365,602 - -0.3
4,365,626 + -0.2
4,365,626 + +0.7
4,365,627 - -0.7
4,365,628 + -0.1
4,365,709 - -0.2
4,365,712 + +1.7
4,365,712 + +0.5
4,365,713 - -1.4
4,365,745 + -0.2
4,365,770 + -0.7
4,365,770 + +0.9
4,365,778 - +0.8
4,365,799 - -1.2
4,365,799 - -1.8
4,365,815 + -0.5
4,365,815 + -1.6
4,365,844 - -1.7
4,365,845 + CA264_18800 0.10 -0.8
4,365,956 + CA264_18800 0.26 -2.0
4,365,956 + CA264_18800 0.26 -0.6
4,365,956 + CA264_18800 0.26 -1.1
4,365,957 - CA264_18800 0.26 -1.7
4,365,957 - CA264_18800 0.26 -1.4
4,365,957 - CA264_18800 0.26 -2.1
4,365,959 - CA264_18800 0.26 -0.8
4,366,555 + -0.4
4,366,571 - +0.3
4,366,723 - CA264_18805 0.30 -0.1
4,366,734 - CA264_18805 0.32 -0.7
4,366,734 - CA264_18805 0.32 -1.4
4,366,734 - CA264_18805 0.32 +0.6
4,366,737 + CA264_18805 0.33 -0.3
4,366,738 - CA264_18805 0.33 -0.1
4,366,778 - CA264_18805 0.41 +0.0
4,366,825 - CA264_18805 0.50 -0.9
4,366,825 - CA264_18805 0.50 -1.0
4,366,862 + CA264_18805 0.57 -0.5
4,366,882 + CA264_18805 0.61 -0.4
4,366,919 + CA264_18805 0.68 -0.4
4,367,071 + +0.4
4,367,071 + -0.5
4,367,072 - -1.0
4,367,072 - +1.2
4,367,093 + -0.2
4,367,094 - -0.2
4,367,094 - -0.6
4,367,141 - -0.2
4,367,361 + CA264_18810 0.28 -1.4
4,367,361 + CA264_18810 0.28 -0.2
4,367,366 + CA264_18810 0.28 +0.0
4,367,366 + CA264_18810 0.28 -1.3
4,367,417 + CA264_18810 0.33 -1.4
4,367,425 - CA264_18810 0.34 +1.3
4,367,479 - CA264_18810 0.40 -0.6
4,367,479 - CA264_18810 0.40 -0.6

Or see this region's nucleotide sequence