Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18530 and CA264_18535 are separated by 642 nucleotides CA264_18535 and CA264_18540 are separated by 325 nucleotides
CA264_18530: CA264_18530 - MarR family transcriptional regulator, at 4,309,978 to 4,310,463
_18530
CA264_18535: CA264_18535 - TonB dependent receptor, at 4,311,106 to 4,313,583
_18535
CA264_18540: CA264_18540 - RNA methyltransferase, at 4,313,909 to 4,314,448
_18540
Position (kb)
4311
4312
4313
4314 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4310.153 kb on - strand, within CA264_18530 at 4310.301 kb on - strand, within CA264_18530 at 4310.333 kb on + strand, within CA264_18530 at 4310.336 kb on - strand, within CA264_18530 at 4310.436 kb on + strand at 4310.439 kb on + strand at 4310.439 kb on + strand at 4310.439 kb on + strand at 4310.440 kb on - strand at 4310.440 kb on - strand at 4310.457 kb on - strand at 4310.457 kb on - strand at 4310.461 kb on + strand at 4310.464 kb on + strand at 4310.589 kb on + strand at 4310.590 kb on - strand at 4310.594 kb on + strand at 4310.615 kb on - strand at 4310.617 kb on + strand at 4310.655 kb on + strand at 4310.658 kb on + strand at 4310.658 kb on + strand at 4310.659 kb on - strand at 4310.757 kb on + strand at 4310.758 kb on - strand at 4310.980 kb on - strand at 4310.980 kb on - strand at 4311.009 kb on + strand at 4311.009 kb on + strand at 4311.013 kb on + strand at 4311.044 kb on - strand at 4311.268 kb on + strand at 4311.268 kb on + strand at 4311.269 kb on - strand at 4311.269 kb on - strand at 4311.273 kb on - strand at 4311.273 kb on - strand at 4311.291 kb on + strand at 4311.371 kb on - strand, within CA264_18535 at 4311.371 kb on - strand, within CA264_18535 at 4311.413 kb on + strand, within CA264_18535 at 4311.416 kb on + strand, within CA264_18535 at 4311.417 kb on - strand, within CA264_18535 at 4311.459 kb on + strand, within CA264_18535 at 4311.459 kb on + strand, within CA264_18535 at 4311.460 kb on - strand, within CA264_18535 at 4311.656 kb on + strand, within CA264_18535 at 4311.656 kb on + strand, within CA264_18535 at 4311.704 kb on - strand, within CA264_18535 at 4311.761 kb on + strand, within CA264_18535 at 4311.770 kb on + strand, within CA264_18535 at 4311.867 kb on - strand, within CA264_18535 at 4311.882 kb on + strand, within CA264_18535 at 4311.886 kb on - strand, within CA264_18535 at 4311.911 kb on - strand, within CA264_18535 at 4311.947 kb on - strand, within CA264_18535 at 4311.964 kb on - strand, within CA264_18535 at 4311.968 kb on + strand, within CA264_18535 at 4311.969 kb on - strand, within CA264_18535 at 4311.981 kb on - strand, within CA264_18535 at 4311.981 kb on - strand, within CA264_18535 at 4312.059 kb on + strand, within CA264_18535 at 4312.062 kb on - strand, within CA264_18535 at 4312.062 kb on - strand, within CA264_18535 at 4312.073 kb on + strand, within CA264_18535 at 4312.135 kb on - strand, within CA264_18535 at 4312.243 kb on - strand, within CA264_18535 at 4312.243 kb on - strand, within CA264_18535 at 4312.325 kb on + strand, within CA264_18535 at 4312.359 kb on - strand, within CA264_18535 at 4312.359 kb on - strand, within CA264_18535 at 4312.443 kb on + strand, within CA264_18535 at 4312.770 kb on - strand, within CA264_18535 at 4312.770 kb on - strand, within CA264_18535 at 4312.932 kb on - strand, within CA264_18535 at 4312.969 kb on + strand, within CA264_18535 at 4312.970 kb on - strand, within CA264_18535 at 4313.042 kb on - strand, within CA264_18535 at 4313.042 kb on - strand, within CA264_18535 at 4313.140 kb on + strand, within CA264_18535 at 4313.155 kb on - strand, within CA264_18535 at 4313.180 kb on + strand, within CA264_18535 at 4313.180 kb on + strand, within CA264_18535 at 4313.303 kb on + strand, within CA264_18535 at 4313.303 kb on + strand, within CA264_18535 at 4313.303 kb on + strand, within CA264_18535 at 4313.304 kb on - strand, within CA264_18535 at 4313.342 kb on + strand at 4313.343 kb on - strand at 4313.343 kb on - strand at 4313.551 kb on + strand at 4313.551 kb on + strand at 4313.552 kb on - strand at 4313.552 kb on - strand at 4313.553 kb on + strand at 4313.553 kb on + strand at 4313.553 kb on + strand at 4313.554 kb on - strand at 4313.554 kb on - strand at 4313.557 kb on + strand at 4313.557 kb on + strand at 4313.558 kb on - strand at 4313.558 kb on - strand at 4313.590 kb on + strand at 4313.618 kb on - strand at 4313.622 kb on + strand at 4313.622 kb on + strand at 4313.720 kb on + strand at 4313.737 kb on - strand at 4313.737 kb on - strand at 4313.737 kb on - strand at 4313.741 kb on - strand at 4313.741 kb on - strand at 4313.741 kb on - strand at 4313.741 kb on - strand at 4313.742 kb on + strand at 4313.743 kb on - strand at 4313.743 kb on - strand at 4313.769 kb on - strand at 4313.974 kb on + strand, within CA264_18540 at 4314.082 kb on - strand, within CA264_18540 at 4314.121 kb on + strand, within CA264_18540 at 4314.122 kb on - strand, within CA264_18540 at 4314.122 kb on - strand, within CA264_18540 at 4314.251 kb on - strand, within CA264_18540 at 4314.432 kb on - strand at 4314.474 kb on - strand at 4314.474 kb on - strand at 4314.550 kb on - strand at 4314.568 kb on + strand at 4314.570 kb on + strand at 4314.571 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,310,153 - CA264_18530 0.36 -0.7 4,310,301 - CA264_18530 0.66 +1.9 4,310,333 + CA264_18530 0.73 -0.7 4,310,336 - CA264_18530 0.74 -0.5 4,310,436 + -0.9 4,310,439 + +0.2 4,310,439 + +0.2 4,310,439 + +0.0 4,310,440 - -0.4 4,310,440 - +0.1 4,310,457 - -0.9 4,310,457 - +0.3 4,310,461 + -1.0 4,310,464 + -0.2 4,310,589 + -0.3 4,310,590 - -0.9 4,310,594 + -0.9 4,310,615 - +0.1 4,310,617 + -0.4 4,310,655 + -1.8 4,310,658 + -1.0 4,310,658 + -1.1 4,310,659 - -0.0 4,310,757 + -0.4 4,310,758 - +0.0 4,310,980 - -0.2 4,310,980 - -1.3 4,311,009 + -1.8 4,311,009 + -1.3 4,311,013 + +0.0 4,311,044 - -0.0 4,311,268 + -0.6 4,311,268 + -0.7 4,311,269 - +1.0 4,311,269 - -0.7 4,311,273 - -1.4 4,311,273 - -0.5 4,311,291 + -1.8 4,311,371 - CA264_18535 0.11 +0.8 4,311,371 - CA264_18535 0.11 +0.1 4,311,413 + CA264_18535 0.12 -0.7 4,311,416 + CA264_18535 0.13 -1.4 4,311,417 - CA264_18535 0.13 +0.3 4,311,459 + CA264_18535 0.14 -0.8 4,311,459 + CA264_18535 0.14 +0.4 4,311,460 - CA264_18535 0.14 +0.1 4,311,656 + CA264_18535 0.22 -1.9 4,311,656 + CA264_18535 0.22 -1.4 4,311,704 - CA264_18535 0.24 -0.1 4,311,761 + CA264_18535 0.26 -1.3 4,311,770 + CA264_18535 0.27 -1.4 4,311,867 - CA264_18535 0.31 -0.9 4,311,882 + CA264_18535 0.31 -0.4 4,311,886 - CA264_18535 0.31 +0.7 4,311,911 - CA264_18535 0.32 -0.1 4,311,947 - CA264_18535 0.34 +0.3 4,311,964 - CA264_18535 0.35 +1.6 4,311,968 + CA264_18535 0.35 -0.3 4,311,969 - CA264_18535 0.35 +0.3 4,311,981 - CA264_18535 0.35 +0.7 4,311,981 - CA264_18535 0.35 -0.1 4,312,059 + CA264_18535 0.38 +0.4 4,312,062 - CA264_18535 0.39 -0.2 4,312,062 - CA264_18535 0.39 -0.6 4,312,073 + CA264_18535 0.39 -2.5 4,312,135 - CA264_18535 0.42 -0.6 4,312,243 - CA264_18535 0.46 +0.2 4,312,243 - CA264_18535 0.46 -1.7 4,312,325 + CA264_18535 0.49 -1.8 4,312,359 - CA264_18535 0.51 -0.6 4,312,359 - CA264_18535 0.51 -1.6 4,312,443 + CA264_18535 0.54 -1.8 4,312,770 - CA264_18535 0.67 -0.0 4,312,770 - CA264_18535 0.67 -0.1 4,312,932 - CA264_18535 0.74 -0.9 4,312,969 + CA264_18535 0.75 -1.6 4,312,970 - CA264_18535 0.75 -0.9 4,313,042 - CA264_18535 0.78 -1.3 4,313,042 - CA264_18535 0.78 -1.4 4,313,140 + CA264_18535 0.82 +0.1 4,313,155 - CA264_18535 0.83 -0.3 4,313,180 + CA264_18535 0.84 -2.8 4,313,180 + CA264_18535 0.84 -1.2 4,313,303 + CA264_18535 0.89 -0.3 4,313,303 + CA264_18535 0.89 -0.7 4,313,303 + CA264_18535 0.89 -2.8 4,313,304 - CA264_18535 0.89 -0.7 4,313,342 + -2.7 4,313,343 - +0.0 4,313,343 - -1.3 4,313,551 + -3.5 4,313,551 + -2.4 4,313,552 - -1.4 4,313,552 - -0.4 4,313,553 + -4.2 4,313,553 + -2.5 4,313,553 + -4.0 4,313,554 - -1.9 4,313,554 - +0.0 4,313,557 + -2.4 4,313,557 + -2.5 4,313,558 - -0.7 4,313,558 - +0.5 4,313,590 + -2.6 4,313,618 - -2.1 4,313,622 + -1.4 4,313,622 + -2.5 4,313,720 + -2.3 4,313,737 - -0.2 4,313,737 - -0.7 4,313,737 - +0.0 4,313,741 - -0.5 4,313,741 - -1.8 4,313,741 - -0.0 4,313,741 - +0.7 4,313,742 + -2.0 4,313,743 - -0.3 4,313,743 - -0.5 4,313,769 - -2.4 4,313,974 + CA264_18540 0.12 -2.5 4,314,082 - CA264_18540 0.32 -1.6 4,314,121 + CA264_18540 0.39 -1.9 4,314,122 - CA264_18540 0.39 +1.9 4,314,122 - CA264_18540 0.39 -1.0 4,314,251 - CA264_18540 0.63 -1.9 4,314,432 - -1.2 4,314,474 - -1.2 4,314,474 - -0.8 4,314,550 - -1.6 4,314,568 + +0.9 4,314,570 + -2.5 4,314,571 - -1.4
Or see this region's nucleotide sequence