Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18135

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18125 and CA264_18130 are separated by 126 nucleotidesCA264_18130 and CA264_18135 are separated by 30 nucleotidesCA264_18135 and CA264_18140 are separated by 90 nucleotidesCA264_18140 and CA264_18145 are separated by 278 nucleotides CA264_18125: CA264_18125 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 4,214,951 to 4,215,997 _18125 CA264_18130: CA264_18130 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 4,216,124 to 4,216,810 _18130 CA264_18135: CA264_18135 - ABC transporter ATP-binding protein, at 4,216,841 to 4,217,566 _18135 CA264_18140: CA264_18140 - hypothetical protein, at 4,217,657 to 4,217,878 _18140 CA264_18145: CA264_18145 - ribonuclease, at 4,218,157 to 4,219,470 _18145 Position (kb) 4216 4217 4218Strain fitness (log2 ratio) -2 -1 0 1 2at 4216.002 kb on - strandat 4216.078 kb on + strandat 4216.111 kb on + strandat 4216.768 kb on + strandat 4216.770 kb on + strandat 4216.800 kb on + strandat 4217.052 kb on + strand, within CA264_18135at 4217.053 kb on - strand, within CA264_18135at 4217.053 kb on - strand, within CA264_18135at 4217.055 kb on + strand, within CA264_18135at 4217.055 kb on + strand, within CA264_18135at 4217.206 kb on + strand, within CA264_18135at 4217.206 kb on + strand, within CA264_18135at 4217.206 kb on + strand, within CA264_18135at 4217.238 kb on + strand, within CA264_18135at 4217.238 kb on + strand, within CA264_18135at 4217.300 kb on - strand, within CA264_18135at 4217.377 kb on + strand, within CA264_18135at 4217.378 kb on - strand, within CA264_18135at 4217.412 kb on - strand, within CA264_18135at 4217.475 kb on - strand, within CA264_18135at 4217.580 kb on - strandat 4217.607 kb on + strandat 4217.608 kb on - strandat 4217.636 kb on - strandat 4217.650 kb on - strandat 4217.662 kb on - strandat 4217.893 kb on + strandat 4217.894 kb on - strandat 4218.142 kb on - strandat 4218.146 kb on + strandat 4218.146 kb on + strandat 4218.148 kb on + strandat 4218.148 kb on + strandat 4218.148 kb on + strandat 4218.149 kb on - strandat 4218.277 kb on - strandat 4218.343 kb on - strand, within CA264_18145at 4218.428 kb on + strand, within CA264_18145at 4218.429 kb on - strand, within CA264_18145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,216,002 - -2.4
4,216,078 + -0.0
4,216,111 + +0.3
4,216,768 + -1.6
4,216,770 + -0.6
4,216,800 + +0.0
4,217,052 + CA264_18135 0.29 +1.2
4,217,053 - CA264_18135 0.29 +0.6
4,217,053 - CA264_18135 0.29 +1.8
4,217,055 + CA264_18135 0.29 -0.3
4,217,055 + CA264_18135 0.29 +0.2
4,217,206 + CA264_18135 0.50 +0.9
4,217,206 + CA264_18135 0.50 +0.4
4,217,206 + CA264_18135 0.50 +0.7
4,217,238 + CA264_18135 0.55 -0.0
4,217,238 + CA264_18135 0.55 +0.7
4,217,300 - CA264_18135 0.63 +1.2
4,217,377 + CA264_18135 0.74 +0.6
4,217,378 - CA264_18135 0.74 +1.2
4,217,412 - CA264_18135 0.79 +1.4
4,217,475 - CA264_18135 0.87 +2.0
4,217,580 - -1.6
4,217,607 + -0.8
4,217,608 - +0.3
4,217,636 - -0.8
4,217,650 - +0.1
4,217,662 - -1.2
4,217,893 + -0.4
4,217,894 - +0.5
4,218,142 - +0.3
4,218,146 + +0.9
4,218,146 + -1.0
4,218,148 + +0.1
4,218,148 + -1.0
4,218,148 + -0.3
4,218,149 - -0.9
4,218,277 - -0.7
4,218,343 - CA264_18145 0.14 +0.2
4,218,428 + CA264_18145 0.21 -0.2
4,218,429 - CA264_18145 0.21 -0.1

Or see this region's nucleotide sequence