Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17690 and CA264_17695 are separated by 512 nucleotides CA264_17695 and CA264_17700 are separated by 221 nucleotides
CA264_17690: CA264_17690 - hypothetical protein, at 4,115,711 to 4,117,660
_17690
CA264_17695: CA264_17695 - phosphoribosylformylglycinamidine cyclo-ligase, at 4,118,173 to 4,119,342
_17695
CA264_17700: CA264_17700 - hypothetical protein, at 4,119,564 to 4,120,304
_17700
Position (kb)
4118
4119
4120 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4117.266 kb on + strand, within CA264_17690 at 4117.469 kb on + strand at 4117.648 kb on + strand at 4117.649 kb on - strand at 4117.650 kb on + strand at 4117.651 kb on - strand at 4117.658 kb on + strand at 4117.668 kb on - strand at 4117.692 kb on + strand at 4117.696 kb on + strand at 4117.697 kb on - strand at 4117.697 kb on - strand at 4117.698 kb on + strand at 4117.699 kb on - strand at 4117.744 kb on - strand at 4117.744 kb on - strand at 4117.944 kb on + strand at 4117.944 kb on + strand at 4117.944 kb on + strand at 4117.945 kb on - strand at 4118.061 kb on - strand at 4118.061 kb on - strand at 4118.107 kb on - strand at 4118.172 kb on + strand at 4118.255 kb on + strand at 4118.256 kb on - strand at 4118.312 kb on - strand, within CA264_17695 at 4118.323 kb on - strand, within CA264_17695 at 4118.363 kb on - strand, within CA264_17695 at 4118.369 kb on - strand, within CA264_17695 at 4118.467 kb on - strand, within CA264_17695 at 4118.590 kb on + strand, within CA264_17695 at 4118.684 kb on + strand, within CA264_17695 at 4118.698 kb on - strand, within CA264_17695 at 4118.752 kb on + strand, within CA264_17695 at 4118.793 kb on + strand, within CA264_17695 at 4118.794 kb on - strand, within CA264_17695 at 4118.820 kb on + strand, within CA264_17695 at 4118.824 kb on + strand, within CA264_17695 at 4118.825 kb on - strand, within CA264_17695 at 4118.825 kb on - strand, within CA264_17695 at 4118.851 kb on + strand, within CA264_17695 at 4118.851 kb on + strand, within CA264_17695 at 4118.852 kb on - strand, within CA264_17695 at 4118.852 kb on - strand, within CA264_17695 at 4118.852 kb on - strand, within CA264_17695 at 4118.852 kb on - strand, within CA264_17695 at 4118.852 kb on - strand, within CA264_17695 at 4118.879 kb on + strand, within CA264_17695 at 4118.880 kb on - strand, within CA264_17695 at 4118.881 kb on + strand, within CA264_17695 at 4118.909 kb on + strand, within CA264_17695 at 4118.933 kb on + strand, within CA264_17695 at 4118.937 kb on + strand, within CA264_17695 at 4118.938 kb on - strand, within CA264_17695 at 4118.966 kb on - strand, within CA264_17695 at 4118.988 kb on - strand, within CA264_17695 at 4119.012 kb on - strand, within CA264_17695 at 4119.084 kb on - strand, within CA264_17695 at 4119.124 kb on - strand, within CA264_17695 at 4119.161 kb on - strand, within CA264_17695 at 4119.171 kb on + strand, within CA264_17695 at 4119.171 kb on + strand, within CA264_17695 at 4119.232 kb on - strand at 4119.332 kb on - strand at 4119.350 kb on - strand at 4119.351 kb on + strand at 4119.352 kb on - strand at 4119.352 kb on - strand at 4119.434 kb on + strand at 4119.463 kb on + strand at 4119.464 kb on - strand at 4119.559 kb on + strand at 4119.582 kb on + strand at 4119.582 kb on + strand at 4119.620 kb on - strand at 4119.717 kb on - strand, within CA264_17700 at 4119.733 kb on + strand, within CA264_17700 at 4119.733 kb on + strand, within CA264_17700 at 4119.733 kb on + strand, within CA264_17700 at 4119.733 kb on + strand, within CA264_17700 at 4119.759 kb on + strand, within CA264_17700 at 4119.760 kb on - strand, within CA264_17700 at 4119.788 kb on - strand, within CA264_17700 at 4119.830 kb on + strand, within CA264_17700 at 4119.831 kb on - strand, within CA264_17700 at 4119.870 kb on + strand, within CA264_17700 at 4119.899 kb on + strand, within CA264_17700 at 4119.900 kb on - strand, within CA264_17700 at 4119.900 kb on - strand, within CA264_17700 at 4119.900 kb on - strand, within CA264_17700 at 4119.900 kb on - strand, within CA264_17700 at 4119.903 kb on + strand, within CA264_17700 at 4119.904 kb on - strand, within CA264_17700 at 4119.907 kb on - strand, within CA264_17700 at 4119.909 kb on - strand, within CA264_17700 at 4119.967 kb on + strand, within CA264_17700 at 4120.043 kb on + strand, within CA264_17700 at 4120.044 kb on - strand, within CA264_17700 at 4120.044 kb on - strand, within CA264_17700 at 4120.045 kb on + strand, within CA264_17700 at 4120.049 kb on - strand, within CA264_17700 at 4120.049 kb on - strand, within CA264_17700 at 4120.101 kb on - strand, within CA264_17700 at 4120.105 kb on - strand, within CA264_17700 at 4120.134 kb on - strand, within CA264_17700 at 4120.134 kb on - strand, within CA264_17700 at 4120.156 kb on + strand, within CA264_17700 at 4120.157 kb on - strand, within CA264_17700 at 4120.162 kb on - strand, within CA264_17700 at 4120.209 kb on + strand, within CA264_17700 at 4120.236 kb on + strand at 4120.241 kb on + strand at 4120.241 kb on + strand at 4120.242 kb on - strand at 4120.242 kb on - strand at 4120.242 kb on - strand at 4120.250 kb on + strand at 4120.276 kb on - strand at 4120.302 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 4,117,266 + CA264_17690 0.80 +1.6 4,117,469 + -3.0 4,117,648 + +0.0 4,117,649 - -0.4 4,117,650 + -0.9 4,117,651 - +0.9 4,117,658 + -0.5 4,117,668 - +0.2 4,117,692 + +0.8 4,117,696 + +0.7 4,117,697 - -1.2 4,117,697 - -0.5 4,117,698 + -0.4 4,117,699 - +0.2 4,117,744 - +0.9 4,117,744 - +0.5 4,117,944 + +0.1 4,117,944 + -3.5 4,117,944 + +0.7 4,117,945 - +0.2 4,118,061 - -0.8 4,118,061 - -0.2 4,118,107 - -0.3 4,118,172 + +0.5 4,118,255 + +0.9 4,118,256 - -0.6 4,118,312 - CA264_17695 0.12 -1.1 4,118,323 - CA264_17695 0.13 -0.2 4,118,363 - CA264_17695 0.16 -1.1 4,118,369 - CA264_17695 0.17 -0.4 4,118,467 - CA264_17695 0.25 -0.0 4,118,590 + CA264_17695 0.36 -1.5 4,118,684 + CA264_17695 0.44 -0.4 4,118,698 - CA264_17695 0.45 -0.4 4,118,752 + CA264_17695 0.49 +0.3 4,118,793 + CA264_17695 0.53 -0.7 4,118,794 - CA264_17695 0.53 -0.3 4,118,820 + CA264_17695 0.55 -0.3 4,118,824 + CA264_17695 0.56 -0.3 4,118,825 - CA264_17695 0.56 -0.5 4,118,825 - CA264_17695 0.56 +0.5 4,118,851 + CA264_17695 0.58 -0.8 4,118,851 + CA264_17695 0.58 -0.3 4,118,852 - CA264_17695 0.58 -0.1 4,118,852 - CA264_17695 0.58 +0.4 4,118,852 - CA264_17695 0.58 -0.3 4,118,852 - CA264_17695 0.58 +1.1 4,118,852 - CA264_17695 0.58 -0.9 4,118,879 + CA264_17695 0.60 +0.0 4,118,880 - CA264_17695 0.60 -0.5 4,118,881 + CA264_17695 0.61 +0.3 4,118,909 + CA264_17695 0.63 -1.0 4,118,933 + CA264_17695 0.65 -0.8 4,118,937 + CA264_17695 0.65 -0.2 4,118,938 - CA264_17695 0.65 -0.7 4,118,966 - CA264_17695 0.68 -0.8 4,118,988 - CA264_17695 0.70 -0.2 4,119,012 - CA264_17695 0.72 +1.3 4,119,084 - CA264_17695 0.78 -0.7 4,119,124 - CA264_17695 0.81 -1.3 4,119,161 - CA264_17695 0.84 -0.1 4,119,171 + CA264_17695 0.85 -1.6 4,119,171 + CA264_17695 0.85 -0.7 4,119,232 - -0.9 4,119,332 - +0.2 4,119,350 - -0.7 4,119,351 + -0.4 4,119,352 - -0.4 4,119,352 - -1.1 4,119,434 + -0.1 4,119,463 + +0.2 4,119,464 - -0.6 4,119,559 + +0.8 4,119,582 + -1.7 4,119,582 + -1.4 4,119,620 - +0.6 4,119,717 - CA264_17700 0.21 +0.8 4,119,733 + CA264_17700 0.23 -1.4 4,119,733 + CA264_17700 0.23 -0.6 4,119,733 + CA264_17700 0.23 -0.7 4,119,733 + CA264_17700 0.23 +0.4 4,119,759 + CA264_17700 0.26 -0.3 4,119,760 - CA264_17700 0.26 +0.1 4,119,788 - CA264_17700 0.30 -0.4 4,119,830 + CA264_17700 0.36 -0.7 4,119,831 - CA264_17700 0.36 +0.0 4,119,870 + CA264_17700 0.41 +0.5 4,119,899 + CA264_17700 0.45 -0.3 4,119,900 - CA264_17700 0.45 -1.9 4,119,900 - CA264_17700 0.45 -0.1 4,119,900 - CA264_17700 0.45 -0.4 4,119,900 - CA264_17700 0.45 -0.2 4,119,903 + CA264_17700 0.46 +0.3 4,119,904 - CA264_17700 0.46 -0.1 4,119,907 - CA264_17700 0.46 +0.3 4,119,909 - CA264_17700 0.47 -1.1 4,119,967 + CA264_17700 0.54 -1.3 4,120,043 + CA264_17700 0.65 -0.3 4,120,044 - CA264_17700 0.65 +0.6 4,120,044 - CA264_17700 0.65 -0.8 4,120,045 + CA264_17700 0.65 -0.8 4,120,049 - CA264_17700 0.65 -0.4 4,120,049 - CA264_17700 0.65 -0.9 4,120,101 - CA264_17700 0.72 -0.1 4,120,105 - CA264_17700 0.73 +0.2 4,120,134 - CA264_17700 0.77 +1.5 4,120,134 - CA264_17700 0.77 -0.3 4,120,156 + CA264_17700 0.80 -0.3 4,120,157 - CA264_17700 0.80 +0.5 4,120,162 - CA264_17700 0.81 +0.7 4,120,209 + CA264_17700 0.87 -0.1 4,120,236 + -0.4 4,120,241 + +0.5 4,120,241 + -1.7 4,120,242 - +0.2 4,120,242 - -3.5 4,120,242 - -0.8 4,120,250 + +0.5 4,120,276 - -0.3 4,120,302 + -0.5
Or see this region's nucleotide sequence