Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17675

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17665 and CA264_17670 are separated by 297 nucleotidesCA264_17670 and CA264_17675 are separated by 170 nucleotidesCA264_17675 and CA264_17680 are separated by 142 nucleotides CA264_17665: CA264_17665 - molecular chaperone DnaJ, at 4,111,138 to 4,112,253 _17665 CA264_17670: CA264_17670 - tRNA-Phe, at 4,112,551 to 4,112,626 _17670 CA264_17675: CA264_17675 - Fe-S oxidoreductase, at 4,112,797 to 4,114,170 _17675 CA264_17680: CA264_17680 - CoB--CoM heterodisulfide reductase, at 4,114,313 to 4,115,095 _17680 Position (kb) 4112 4113 4114 4115Strain fitness (log2 ratio) -2 -1 0 1 2at 4111.817 kb on - strand, within CA264_17665at 4111.819 kb on - strand, within CA264_17665at 4111.950 kb on + strand, within CA264_17665at 4111.952 kb on + strand, within CA264_17665at 4111.963 kb on - strand, within CA264_17665at 4112.035 kb on + strand, within CA264_17665at 4112.036 kb on - strand, within CA264_17665at 4112.036 kb on - strand, within CA264_17665at 4112.036 kb on - strand, within CA264_17665at 4112.072 kb on - strand, within CA264_17665at 4112.072 kb on - strand, within CA264_17665at 4112.125 kb on + strand, within CA264_17665at 4112.128 kb on + strand, within CA264_17665at 4112.197 kb on + strandat 4112.223 kb on - strandat 4112.278 kb on - strandat 4112.278 kb on - strandat 4112.314 kb on + strandat 4112.319 kb on - strandat 4112.319 kb on - strandat 4112.336 kb on + strandat 4112.337 kb on - strandat 4112.394 kb on + strandat 4112.395 kb on - strandat 4112.395 kb on - strandat 4112.395 kb on - strandat 4112.398 kb on + strandat 4112.398 kb on + strandat 4112.398 kb on + strandat 4112.399 kb on - strandat 4112.399 kb on - strandat 4112.404 kb on + strandat 4112.405 kb on - strandat 4112.405 kb on - strandat 4112.405 kb on - strandat 4112.408 kb on + strandat 4112.410 kb on + strandat 4112.411 kb on - strandat 4112.411 kb on - strandat 4112.411 kb on - strandat 4112.416 kb on + strandat 4112.476 kb on - strandat 4112.509 kb on + strandat 4112.510 kb on - strandat 4112.730 kb on + strandat 4112.765 kb on + strandat 4112.766 kb on - strandat 4112.770 kb on - strandat 4112.772 kb on + strandat 4112.776 kb on + strandat 4112.776 kb on + strandat 4112.777 kb on - strandat 4112.802 kb on - strandat 4113.016 kb on + strand, within CA264_17675at 4113.016 kb on + strand, within CA264_17675at 4113.020 kb on + strand, within CA264_17675at 4113.040 kb on - strand, within CA264_17675at 4113.061 kb on - strand, within CA264_17675at 4113.063 kb on - strand, within CA264_17675at 4113.069 kb on + strand, within CA264_17675at 4113.112 kb on + strand, within CA264_17675at 4113.311 kb on + strand, within CA264_17675at 4113.419 kb on + strand, within CA264_17675at 4113.420 kb on - strand, within CA264_17675at 4113.420 kb on - strand, within CA264_17675at 4113.420 kb on - strand, within CA264_17675at 4113.450 kb on - strand, within CA264_17675at 4113.450 kb on - strand, within CA264_17675at 4113.475 kb on + strand, within CA264_17675at 4113.475 kb on + strand, within CA264_17675at 4113.526 kb on + strand, within CA264_17675at 4113.526 kb on + strand, within CA264_17675at 4113.527 kb on - strand, within CA264_17675at 4113.527 kb on - strand, within CA264_17675at 4113.527 kb on - strand, within CA264_17675at 4113.656 kb on + strand, within CA264_17675at 4113.716 kb on - strand, within CA264_17675at 4113.724 kb on - strand, within CA264_17675at 4113.971 kb on + strand, within CA264_17675at 4114.150 kb on + strandat 4114.150 kb on + strandat 4114.150 kb on + strandat 4114.155 kb on - strandat 4114.155 kb on - strandat 4114.214 kb on - strandat 4114.221 kb on + strandat 4114.280 kb on + strandat 4114.289 kb on - strandat 4114.330 kb on + strandat 4114.392 kb on - strand, within CA264_17680at 4114.392 kb on - strand, within CA264_17680at 4114.401 kb on + strand, within CA264_17680at 4114.423 kb on - strand, within CA264_17680at 4114.531 kb on + strand, within CA264_17680at 4114.597 kb on + strand, within CA264_17680at 4114.676 kb on - strand, within CA264_17680at 4114.751 kb on + strand, within CA264_17680at 4114.752 kb on - strand, within CA264_17680at 4114.775 kb on + strand, within CA264_17680at 4114.776 kb on - strand, within CA264_17680at 4114.837 kb on - strand, within CA264_17680at 4114.990 kb on + strand, within CA264_17680at 4115.093 kb on + strandat 4115.094 kb on - strandat 4115.096 kb on + strandat 4115.141 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,111,817 - CA264_17665 0.61 -0.8
4,111,819 - CA264_17665 0.61 +0.2
4,111,950 + CA264_17665 0.73 -0.4
4,111,952 + CA264_17665 0.73 -0.9
4,111,963 - CA264_17665 0.74 -0.7
4,112,035 + CA264_17665 0.80 -0.5
4,112,036 - CA264_17665 0.80 -0.3
4,112,036 - CA264_17665 0.80 -1.1
4,112,036 - CA264_17665 0.80 +0.9
4,112,072 - CA264_17665 0.84 -0.4
4,112,072 - CA264_17665 0.84 -0.6
4,112,125 + CA264_17665 0.88 -0.1
4,112,128 + CA264_17665 0.89 -0.3
4,112,197 + -1.2
4,112,223 - +0.0
4,112,278 - +0.9
4,112,278 - +0.8
4,112,314 + -0.5
4,112,319 - +0.4
4,112,319 - +0.4
4,112,336 + -1.3
4,112,337 - +0.3
4,112,394 + +0.1
4,112,395 - -0.8
4,112,395 - +1.2
4,112,395 - -0.7
4,112,398 + -0.2
4,112,398 + -1.1
4,112,398 + -0.4
4,112,399 - -0.2
4,112,399 - -1.0
4,112,404 + +0.1
4,112,405 - +0.6
4,112,405 - -2.3
4,112,405 - +0.7
4,112,408 + +0.5
4,112,410 + -1.2
4,112,411 - +0.5
4,112,411 - -2.1
4,112,411 - +0.3
4,112,416 + -1.6
4,112,476 - -0.1
4,112,509 + -0.8
4,112,510 - -0.3
4,112,730 + -0.7
4,112,765 + -0.4
4,112,766 - -0.1
4,112,770 - +0.1
4,112,772 + -0.2
4,112,776 + -0.1
4,112,776 + -1.1
4,112,777 - +0.0
4,112,802 - +1.0
4,113,016 + CA264_17675 0.16 +0.4
4,113,016 + CA264_17675 0.16 +1.4
4,113,020 + CA264_17675 0.16 -0.1
4,113,040 - CA264_17675 0.18 +1.6
4,113,061 - CA264_17675 0.19 +1.5
4,113,063 - CA264_17675 0.19 +1.4
4,113,069 + CA264_17675 0.20 +0.0
4,113,112 + CA264_17675 0.23 +1.0
4,113,311 + CA264_17675 0.37 +0.6
4,113,419 + CA264_17675 0.45 +0.2
4,113,420 - CA264_17675 0.45 +1.3
4,113,420 - CA264_17675 0.45 +2.0
4,113,420 - CA264_17675 0.45 +0.5
4,113,450 - CA264_17675 0.48 +1.2
4,113,450 - CA264_17675 0.48 +0.6
4,113,475 + CA264_17675 0.49 +0.9
4,113,475 + CA264_17675 0.49 +0.3
4,113,526 + CA264_17675 0.53 +0.0
4,113,526 + CA264_17675 0.53 +0.9
4,113,527 - CA264_17675 0.53 -0.3
4,113,527 - CA264_17675 0.53 +1.6
4,113,527 - CA264_17675 0.53 +1.5
4,113,656 + CA264_17675 0.63 +0.2
4,113,716 - CA264_17675 0.67 +1.7
4,113,724 - CA264_17675 0.67 +1.1
4,113,971 + CA264_17675 0.85 +0.1
4,114,150 + -0.8
4,114,150 + -0.6
4,114,150 + -1.2
4,114,155 - +0.6
4,114,155 - +0.2
4,114,214 - -0.9
4,114,221 + -0.3
4,114,280 + +0.8
4,114,289 - +0.4
4,114,330 + +1.6
4,114,392 - CA264_17680 0.10 +1.2
4,114,392 - CA264_17680 0.10 +1.4
4,114,401 + CA264_17680 0.11 +1.0
4,114,423 - CA264_17680 0.14 -0.0
4,114,531 + CA264_17680 0.28 +1.7
4,114,597 + CA264_17680 0.36 +1.3
4,114,676 - CA264_17680 0.46 +1.4
4,114,751 + CA264_17680 0.56 +1.4
4,114,752 - CA264_17680 0.56 +1.2
4,114,775 + CA264_17680 0.59 +1.2
4,114,776 - CA264_17680 0.59 +1.1
4,114,837 - CA264_17680 0.67 +1.7
4,114,990 + CA264_17680 0.86 +1.1
4,115,093 + -0.6
4,115,094 - +0.3
4,115,096 + -1.4
4,115,141 + -0.3

Or see this region's nucleotide sequence