Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17580

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17570 and CA264_17575 are separated by 124 nucleotidesCA264_17575 and CA264_17580 are separated by 131 nucleotidesCA264_17580 and CA264_17585 are separated by 180 nucleotides CA264_17570: CA264_17570 - TIGR00266 family protein, at 4,094,105 to 4,094,872 _17570 CA264_17575: CA264_17575 - hypothetical protein, at 4,094,997 to 4,095,359 _17575 CA264_17580: CA264_17580 - glutamate--tRNA ligase, at 4,095,491 to 4,097,032 _17580 CA264_17585: CA264_17585 - ribonuclease BN, at 4,097,213 to 4,098,238 _17585 Position (kb) 4095 4096 4097 4098Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4094.641 kb on + strand, within CA264_17570at 4094.760 kb on + strand, within CA264_17570at 4094.760 kb on + strand, within CA264_17570at 4094.848 kb on - strandat 4094.852 kb on + strandat 4094.879 kb on - strandat 4094.879 kb on - strandat 4094.879 kb on - strandat 4094.887 kb on + strandat 4094.888 kb on - strandat 4094.888 kb on - strandat 4094.895 kb on + strandat 4094.944 kb on + strandat 4094.972 kb on - strandat 4094.979 kb on - strandat 4094.979 kb on - strandat 4094.999 kb on - strandat 4095.135 kb on + strand, within CA264_17575at 4095.136 kb on - strand, within CA264_17575at 4095.142 kb on + strand, within CA264_17575at 4095.143 kb on - strand, within CA264_17575at 4095.143 kb on - strand, within CA264_17575at 4095.193 kb on - strand, within CA264_17575at 4095.201 kb on - strand, within CA264_17575at 4095.240 kb on + strand, within CA264_17575at 4095.240 kb on + strand, within CA264_17575at 4095.241 kb on - strand, within CA264_17575at 4095.378 kb on - strandat 4095.380 kb on - strandat 4095.383 kb on + strandat 4095.384 kb on - strandat 4095.390 kb on - strandat 4095.521 kb on - strandat 4097.034 kb on + strandat 4097.034 kb on + strandat 4097.035 kb on - strandat 4097.054 kb on + strandat 4097.094 kb on - strandat 4097.097 kb on + strandat 4097.115 kb on + strandat 4097.115 kb on + strandat 4097.116 kb on - strandat 4097.154 kb on + strandat 4097.162 kb on + strandat 4097.162 kb on + strandat 4097.163 kb on - strandat 4097.171 kb on - strandat 4097.186 kb on + strandat 4097.190 kb on - strandat 4097.191 kb on + strandat 4097.192 kb on - strandat 4097.199 kb on + strandat 4097.199 kb on + strandat 4097.217 kb on + strandat 4097.217 kb on + strandat 4097.221 kb on + strandat 4097.222 kb on - strandat 4097.231 kb on + strandat 4097.243 kb on + strandat 4097.244 kb on - strandat 4097.250 kb on + strandat 4097.251 kb on - strandat 4097.261 kb on + strandat 4097.261 kb on + strandat 4097.261 kb on + strandat 4097.262 kb on - strandat 4097.272 kb on + strandat 4097.312 kb on + strandat 4097.315 kb on + strandat 4097.316 kb on - strand, within CA264_17585at 4097.403 kb on + strand, within CA264_17585at 4097.403 kb on + strand, within CA264_17585at 4097.404 kb on - strand, within CA264_17585at 4097.404 kb on - strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.405 kb on + strand, within CA264_17585at 4097.406 kb on - strand, within CA264_17585at 4097.408 kb on + strand, within CA264_17585at 4097.409 kb on - strand, within CA264_17585at 4097.472 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.586 kb on + strand, within CA264_17585at 4097.609 kb on + strand, within CA264_17585at 4097.816 kb on - strand, within CA264_17585at 4097.816 kb on - strand, within CA264_17585at 4097.819 kb on + strand, within CA264_17585at 4097.819 kb on + strand, within CA264_17585at 4097.820 kb on - strand, within CA264_17585at 4097.879 kb on - strand, within CA264_17585

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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4,094,641 + CA264_17570 0.70 +0.1
4,094,760 + CA264_17570 0.85 -0.0
4,094,760 + CA264_17570 0.85 -0.9
4,094,848 - -0.6
4,094,852 + -0.8
4,094,879 - -0.3
4,094,879 - -0.5
4,094,879 - -0.4
4,094,887 + +0.0
4,094,888 - -0.2
4,094,888 - +0.7
4,094,895 + -0.8
4,094,944 + +0.7
4,094,972 - +0.7
4,094,979 - +0.1
4,094,979 - +0.3
4,094,999 - -0.1
4,095,135 + CA264_17575 0.38 -0.2
4,095,136 - CA264_17575 0.38 -0.7
4,095,142 + CA264_17575 0.40 +0.2
4,095,143 - CA264_17575 0.40 -0.2
4,095,143 - CA264_17575 0.40 -0.8
4,095,193 - CA264_17575 0.54 +1.9
4,095,201 - CA264_17575 0.56 -0.9
4,095,240 + CA264_17575 0.67 -4.5
4,095,240 + CA264_17575 0.67 -2.4
4,095,241 - CA264_17575 0.67 +0.9
4,095,378 - +0.8
4,095,380 - +0.3
4,095,383 + -1.7
4,095,384 - -0.3
4,095,390 - -0.6
4,095,521 - -0.3
4,097,034 + +0.5
4,097,034 + -0.1
4,097,035 - -3.2
4,097,054 + -1.3
4,097,094 - +0.5
4,097,097 + -0.1
4,097,115 + +0.9
4,097,115 + +0.2
4,097,116 - +0.1
4,097,154 + -0.3
4,097,162 + +0.2
4,097,162 + +1.9
4,097,163 - +0.2
4,097,171 - +0.3
4,097,186 + -0.1
4,097,190 - -1.3
4,097,191 + +0.3
4,097,192 - +1.0
4,097,199 + +0.3
4,097,199 + +0.5
4,097,217 + +0.3
4,097,217 + +1.7
4,097,221 + -0.6
4,097,222 - -1.0
4,097,231 + +0.6
4,097,243 + +0.3
4,097,244 - -0.5
4,097,250 + +0.4
4,097,251 - -0.5
4,097,261 + +2.9
4,097,261 + -0.6
4,097,261 + -0.2
4,097,262 - -0.1
4,097,272 + -0.1
4,097,312 + -0.6
4,097,315 + -0.4
4,097,316 - CA264_17585 0.10 +0.1
4,097,403 + CA264_17585 0.19 -0.2
4,097,403 + CA264_17585 0.19 +0.3
4,097,404 - CA264_17585 0.19 -0.8
4,097,404 - CA264_17585 0.19 -0.0
4,097,405 + CA264_17585 0.19 -0.1
4,097,405 + CA264_17585 0.19 -0.1
4,097,405 + CA264_17585 0.19 -0.5
4,097,406 - CA264_17585 0.19 +1.2
4,097,408 + CA264_17585 0.19 -0.3
4,097,409 - CA264_17585 0.19 +0.3
4,097,472 + CA264_17585 0.25 +0.3
4,097,586 + CA264_17585 0.36 -0.8
4,097,586 + CA264_17585 0.36 -0.7
4,097,586 + CA264_17585 0.36 +0.3
4,097,609 + CA264_17585 0.39 -2.1
4,097,816 - CA264_17585 0.59 +0.3
4,097,816 - CA264_17585 0.59 -0.2
4,097,819 + CA264_17585 0.59 -2.1
4,097,819 + CA264_17585 0.59 +0.1
4,097,820 - CA264_17585 0.59 -0.2
4,097,879 - CA264_17585 0.65 -0.6

Or see this region's nucleotide sequence