Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15880

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15875 and CA264_15880 overlap by 1 nucleotidesCA264_15880 and CA264_15885 are separated by 417 nucleotides CA264_15875: CA264_15875 - bacillithiol biosynthesis cysteine-adding enzyme BshC, at 3,705,559 to 3,707,136 _15875 CA264_15880: CA264_15880 - 5-formyltetrahydrofolate cyclo-ligase, at 3,707,136 to 3,707,714 _15880 CA264_15885: CA264_15885 - TetR family transcriptional regulator, at 3,708,132 to 3,708,665 _15885 Position (kb) 3707 3708Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3706.173 kb on + strand, within CA264_15875at 3706.217 kb on + strand, within CA264_15875at 3706.217 kb on + strand, within CA264_15875at 3706.218 kb on - strand, within CA264_15875at 3706.221 kb on + strand, within CA264_15875at 3706.221 kb on + strand, within CA264_15875at 3706.222 kb on - strand, within CA264_15875at 3706.223 kb on + strand, within CA264_15875at 3706.223 kb on + strand, within CA264_15875at 3706.224 kb on - strand, within CA264_15875at 3706.224 kb on - strand, within CA264_15875at 3706.269 kb on - strand, within CA264_15875at 3706.300 kb on - strand, within CA264_15875at 3706.344 kb on + strand, within CA264_15875at 3706.358 kb on - strand, within CA264_15875at 3706.358 kb on - strand, within CA264_15875at 3706.358 kb on - strand, within CA264_15875at 3706.429 kb on + strand, within CA264_15875at 3706.429 kb on + strand, within CA264_15875at 3706.431 kb on + strand, within CA264_15875at 3706.431 kb on + strand, within CA264_15875at 3706.432 kb on - strand, within CA264_15875at 3706.439 kb on + strand, within CA264_15875at 3706.440 kb on - strand, within CA264_15875at 3706.453 kb on - strand, within CA264_15875at 3706.459 kb on - strand, within CA264_15875at 3706.520 kb on + strand, within CA264_15875at 3706.525 kb on - strand, within CA264_15875at 3706.525 kb on - strand, within CA264_15875at 3706.525 kb on - strand, within CA264_15875at 3706.525 kb on - strand, within CA264_15875at 3706.545 kb on + strand, within CA264_15875at 3706.545 kb on + strand, within CA264_15875at 3706.546 kb on - strand, within CA264_15875at 3706.546 kb on - strand, within CA264_15875at 3706.564 kb on + strand, within CA264_15875at 3706.565 kb on - strand, within CA264_15875at 3706.565 kb on - strand, within CA264_15875at 3706.625 kb on - strand, within CA264_15875at 3706.625 kb on - strand, within CA264_15875at 3706.626 kb on + strand, within CA264_15875at 3706.626 kb on + strand, within CA264_15875at 3706.627 kb on - strand, within CA264_15875at 3706.627 kb on - strand, within CA264_15875at 3706.760 kb on + strand, within CA264_15875at 3706.761 kb on - strand, within CA264_15875at 3706.814 kb on + strand, within CA264_15875at 3706.856 kb on + strand, within CA264_15875at 3706.863 kb on + strand, within CA264_15875at 3706.971 kb on + strand, within CA264_15875at 3706.972 kb on - strand, within CA264_15875at 3706.995 kb on + strandat 3707.014 kb on - strandat 3707.027 kb on + strandat 3707.028 kb on + strandat 3707.058 kb on + strandat 3707.059 kb on - strandat 3707.305 kb on + strand, within CA264_15880at 3707.411 kb on - strand, within CA264_15880at 3707.476 kb on + strand, within CA264_15880at 3707.636 kb on + strand, within CA264_15880at 3707.849 kb on + strandat 3707.850 kb on - strandat 3707.883 kb on + strandat 3707.913 kb on - strandat 3707.968 kb on + strandat 3708.010 kb on - strandat 3708.019 kb on - strandat 3708.034 kb on - strandat 3708.115 kb on - strandat 3708.120 kb on - strandat 3708.137 kb on + strandat 3708.251 kb on + strand, within CA264_15885at 3708.253 kb on + strand, within CA264_15885at 3708.254 kb on - strand, within CA264_15885at 3708.254 kb on - strand, within CA264_15885at 3708.254 kb on - strand, within CA264_15885at 3708.264 kb on + strand, within CA264_15885at 3708.264 kb on + strand, within CA264_15885at 3708.265 kb on - strand, within CA264_15885at 3708.265 kb on - strand, within CA264_15885at 3708.265 kb on - strand, within CA264_15885at 3708.269 kb on + strand, within CA264_15885at 3708.269 kb on + strand, within CA264_15885at 3708.654 kb on + strandat 3708.655 kb on - strandat 3708.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,706,173 + CA264_15875 0.39 +0.6
3,706,217 + CA264_15875 0.42 -0.1
3,706,217 + CA264_15875 0.42 +1.3
3,706,218 - CA264_15875 0.42 -0.4
3,706,221 + CA264_15875 0.42 +0.2
3,706,221 + CA264_15875 0.42 +0.6
3,706,222 - CA264_15875 0.42 +1.8
3,706,223 + CA264_15875 0.42 +0.2
3,706,223 + CA264_15875 0.42 +0.8
3,706,224 - CA264_15875 0.42 -0.6
3,706,224 - CA264_15875 0.42 -0.5
3,706,269 - CA264_15875 0.45 +0.2
3,706,300 - CA264_15875 0.47 +1.0
3,706,344 + CA264_15875 0.50 -0.4
3,706,358 - CA264_15875 0.51 +1.1
3,706,358 - CA264_15875 0.51 +1.1
3,706,358 - CA264_15875 0.51 +1.0
3,706,429 + CA264_15875 0.55 -1.7
3,706,429 + CA264_15875 0.55 +0.4
3,706,431 + CA264_15875 0.55 +0.4
3,706,431 + CA264_15875 0.55 +0.1
3,706,432 - CA264_15875 0.55 -0.1
3,706,439 + CA264_15875 0.56 +0.4
3,706,440 - CA264_15875 0.56 +0.6
3,706,453 - CA264_15875 0.57 +0.5
3,706,459 - CA264_15875 0.57 +0.3
3,706,520 + CA264_15875 0.61 +1.1
3,706,525 - CA264_15875 0.61 -0.1
3,706,525 - CA264_15875 0.61 +0.5
3,706,525 - CA264_15875 0.61 +0.6
3,706,525 - CA264_15875 0.61 +0.2
3,706,545 + CA264_15875 0.62 +0.3
3,706,545 + CA264_15875 0.62 +1.6
3,706,546 - CA264_15875 0.63 +0.8
3,706,546 - CA264_15875 0.63 +0.4
3,706,564 + CA264_15875 0.64 +0.8
3,706,565 - CA264_15875 0.64 +1.6
3,706,565 - CA264_15875 0.64 +0.3
3,706,625 - CA264_15875 0.68 +1.3
3,706,625 - CA264_15875 0.68 +0.4
3,706,626 + CA264_15875 0.68 +0.8
3,706,626 + CA264_15875 0.68 -1.3
3,706,627 - CA264_15875 0.68 +0.4
3,706,627 - CA264_15875 0.68 +0.4
3,706,760 + CA264_15875 0.76 +0.6
3,706,761 - CA264_15875 0.76 -0.5
3,706,814 + CA264_15875 0.80 -1.1
3,706,856 + CA264_15875 0.82 +0.3
3,706,863 + CA264_15875 0.83 +1.1
3,706,971 + CA264_15875 0.89 -0.0
3,706,972 - CA264_15875 0.90 +3.0
3,706,995 + +0.6
3,707,014 - -0.3
3,707,027 + +0.2
3,707,028 + +0.5
3,707,058 + +0.7
3,707,059 - +0.4
3,707,305 + CA264_15880 0.29 +0.3
3,707,411 - CA264_15880 0.47 +2.4
3,707,476 + CA264_15880 0.59 +1.3
3,707,636 + CA264_15880 0.86 +2.3
3,707,849 + +0.5
3,707,850 - -0.2
3,707,883 + -0.1
3,707,913 - -0.7
3,707,968 + -0.5
3,708,010 - +1.0
3,708,019 - +2.4
3,708,034 - +0.2
3,708,115 - -0.1
3,708,120 - -0.3
3,708,137 + +0.1
3,708,251 + CA264_15885 0.22 -0.4
3,708,253 + CA264_15885 0.23 -0.2
3,708,254 - CA264_15885 0.23 -1.2
3,708,254 - CA264_15885 0.23 -0.4
3,708,254 - CA264_15885 0.23 -0.2
3,708,264 + CA264_15885 0.25 -0.2
3,708,264 + CA264_15885 0.25 -0.0
3,708,265 - CA264_15885 0.25 -2.1
3,708,265 - CA264_15885 0.25 -1.0
3,708,265 - CA264_15885 0.25 +1.4
3,708,269 + CA264_15885 0.26 +0.3
3,708,269 + CA264_15885 0.26 +1.1
3,708,654 + -0.0
3,708,655 - -0.1
3,708,664 - +0.7

Or see this region's nucleotide sequence