Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14920 and CA264_14925 are separated by 331 nucleotides CA264_14925 and CA264_14930 are separated by 231 nucleotides CA264_14930 and CA264_14935 are separated by 4 nucleotides
CA264_14920: CA264_14920 - hypothetical protein, at 3,507,384 to 3,507,815
_14920
CA264_14925: CA264_14925 - hypothetical protein, at 3,508,147 to 3,508,485
_14925
CA264_14930: CA264_14930 - hypothetical protein, at 3,508,717 to 3,509,040
_14930
CA264_14935: CA264_14935 - sec-independent protein translocase TatC, at 3,509,045 to 3,509,437
_14935
Position (kb)
3508
3509 Strain fitness (log2 ratio)
-1
0
1
2 at 3507.149 kb on + strand at 3507.169 kb on + strand at 3507.182 kb on + strand at 3507.198 kb on + strand at 3507.198 kb on + strand at 3507.218 kb on + strand at 3507.225 kb on + strand at 3507.252 kb on + strand at 3507.252 kb on + strand at 3507.294 kb on - strand at 3507.298 kb on + strand at 3507.311 kb on + strand at 3507.311 kb on + strand at 3507.311 kb on + strand at 3507.311 kb on + strand at 3507.311 kb on + strand at 3507.312 kb on - strand at 3507.312 kb on - strand at 3507.312 kb on - strand at 3507.313 kb on + strand at 3507.313 kb on + strand at 3507.313 kb on + strand at 3507.314 kb on - strand at 3507.314 kb on - strand at 3507.326 kb on + strand at 3507.327 kb on - strand at 3507.459 kb on - strand, within CA264_14920 at 3507.459 kb on - strand, within CA264_14920 at 3507.502 kb on - strand, within CA264_14920 at 3507.533 kb on + strand, within CA264_14920 at 3507.534 kb on - strand, within CA264_14920 at 3507.650 kb on + strand, within CA264_14920 at 3507.650 kb on + strand, within CA264_14920 at 3507.657 kb on + strand, within CA264_14920 at 3507.658 kb on - strand, within CA264_14920 at 3507.662 kb on + strand, within CA264_14920 at 3507.662 kb on + strand, within CA264_14920 at 3507.662 kb on + strand, within CA264_14920 at 3507.662 kb on + strand, within CA264_14920 at 3507.662 kb on + strand, within CA264_14920 at 3507.663 kb on - strand, within CA264_14920 at 3507.663 kb on - strand, within CA264_14920 at 3507.702 kb on - strand, within CA264_14920 at 3507.895 kb on + strand at 3507.899 kb on + strand at 3507.899 kb on + strand at 3507.900 kb on - strand at 3507.900 kb on - strand at 3507.999 kb on - strand at 3508.006 kb on - strand at 3508.033 kb on + strand at 3508.123 kb on + strand at 3508.237 kb on + strand, within CA264_14925 at 3508.242 kb on - strand, within CA264_14925 at 3508.278 kb on + strand, within CA264_14925 at 3508.342 kb on + strand, within CA264_14925 at 3508.431 kb on + strand, within CA264_14925 at 3508.498 kb on + strand at 3508.499 kb on - strand at 3508.563 kb on + strand at 3508.641 kb on + strand at 3508.641 kb on + strand at 3508.641 kb on + strand at 3508.641 kb on + strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.642 kb on - strand at 3508.691 kb on - strand at 3508.695 kb on + strand at 3508.696 kb on - strand at 3508.739 kb on + strand at 3508.778 kb on - strand, within CA264_14930 at 3508.778 kb on - strand, within CA264_14930 at 3508.806 kb on + strand, within CA264_14930 at 3508.867 kb on - strand, within CA264_14930 at 3508.934 kb on - strand, within CA264_14930 at 3509.038 kb on + strand at 3509.039 kb on - strand at 3509.092 kb on + strand, within CA264_14935 at 3509.092 kb on + strand, within CA264_14935 at 3509.093 kb on - strand, within CA264_14935 at 3509.099 kb on + strand, within CA264_14935 at 3509.099 kb on + strand, within CA264_14935 at 3509.100 kb on - strand, within CA264_14935 at 3509.187 kb on - strand, within CA264_14935 at 3509.226 kb on - strand, within CA264_14935 at 3509.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 3,507,149 + -0.5 3,507,169 + -0.2 3,507,182 + +0.1 3,507,198 + -0.2 3,507,198 + -0.1 3,507,218 + -0.1 3,507,225 + -0.7 3,507,252 + -0.1 3,507,252 + +0.0 3,507,294 - +1.9 3,507,298 + -0.2 3,507,311 + +0.5 3,507,311 + -0.1 3,507,311 + +0.6 3,507,311 + +0.5 3,507,311 + -0.1 3,507,312 - -0.8 3,507,312 - -1.1 3,507,312 - -1.4 3,507,313 + -0.0 3,507,313 + +0.1 3,507,313 + +0.4 3,507,314 - -1.3 3,507,314 - -0.1 3,507,326 + -0.3 3,507,327 - -1.5 3,507,459 - CA264_14920 0.17 -0.2 3,507,459 - CA264_14920 0.17 +0.4 3,507,502 - CA264_14920 0.27 -0.3 3,507,533 + CA264_14920 0.34 +0.8 3,507,534 - CA264_14920 0.35 +0.6 3,507,650 + CA264_14920 0.62 -0.0 3,507,650 + CA264_14920 0.62 -0.1 3,507,657 + CA264_14920 0.63 +0.8 3,507,658 - CA264_14920 0.63 -0.1 3,507,662 + CA264_14920 0.64 +0.1 3,507,662 + CA264_14920 0.64 +0.2 3,507,662 + CA264_14920 0.64 +0.7 3,507,662 + CA264_14920 0.64 -0.2 3,507,662 + CA264_14920 0.64 -0.0 3,507,663 - CA264_14920 0.65 -1.0 3,507,663 - CA264_14920 0.65 +0.7 3,507,702 - CA264_14920 0.74 -0.3 3,507,895 + -0.2 3,507,899 + -0.3 3,507,899 + +0.2 3,507,900 - -0.1 3,507,900 - -0.1 3,507,999 - -1.3 3,508,006 - +0.0 3,508,033 + +0.7 3,508,123 + -0.3 3,508,237 + CA264_14925 0.27 +0.8 3,508,242 - CA264_14925 0.28 +0.3 3,508,278 + CA264_14925 0.39 -0.7 3,508,342 + CA264_14925 0.58 +1.5 3,508,431 + CA264_14925 0.84 +2.6 3,508,498 + -0.2 3,508,499 - -0.2 3,508,563 + -0.8 3,508,641 + -0.1 3,508,641 + -0.5 3,508,641 + +0.1 3,508,641 + +0.2 3,508,642 - -0.4 3,508,642 - +0.0 3,508,642 - -1.2 3,508,642 - -0.2 3,508,642 - -1.3 3,508,691 - +0.8 3,508,695 + -0.3 3,508,696 - +0.2 3,508,739 + +1.6 3,508,778 - CA264_14930 0.19 +0.3 3,508,778 - CA264_14930 0.19 +1.5 3,508,806 + CA264_14930 0.27 -0.3 3,508,867 - CA264_14930 0.46 -0.1 3,508,934 - CA264_14930 0.67 -0.0 3,509,038 + -0.7 3,509,039 - +0.6 3,509,092 + CA264_14935 0.12 +0.6 3,509,092 + CA264_14935 0.12 +1.0 3,509,093 - CA264_14935 0.12 +0.8 3,509,099 + CA264_14935 0.14 +0.2 3,509,099 + CA264_14935 0.14 -0.4 3,509,100 - CA264_14935 0.14 +0.7 3,509,187 - CA264_14935 0.36 -0.3 3,509,226 - CA264_14935 0.46 +0.1 3,509,435 + -0.2
Or see this region's nucleotide sequence