Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14535 and CA264_14540 are separated by 268 nucleotides CA264_14540 and CA264_14545 are separated by 0 nucleotides CA264_14545 and CA264_14550 are separated by 72 nucleotides
CA264_14535: CA264_14535 - lytic transglycosylase, at 3,409,712 to 3,411,232
_14535
CA264_14540: CA264_14540 - NADP-dependent malic enzyme, at 3,411,501 to 3,413,771
_14540
CA264_14545: CA264_14545 - Holliday junction branch migration protein RuvA, at 3,413,772 to 3,414,362
_14545
CA264_14550: CA264_14550 - cell surface protein SprA, at 3,414,435 to 3,421,562
_14550
Position (kb)
3411
3412
3413
3414 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3410.504 kb on + strand, within CA264_14535 at 3410.504 kb on + strand, within CA264_14535 at 3410.504 kb on + strand, within CA264_14535 at 3410.505 kb on - strand, within CA264_14535 at 3410.561 kb on + strand, within CA264_14535 at 3410.561 kb on + strand, within CA264_14535 at 3410.571 kb on + strand, within CA264_14535 at 3410.571 kb on + strand, within CA264_14535 at 3410.572 kb on - strand, within CA264_14535 at 3410.688 kb on - strand, within CA264_14535 at 3410.688 kb on - strand, within CA264_14535 at 3410.690 kb on - strand, within CA264_14535 at 3410.752 kb on + strand, within CA264_14535 at 3410.753 kb on - strand, within CA264_14535 at 3410.878 kb on + strand, within CA264_14535 at 3410.882 kb on + strand, within CA264_14535 at 3410.882 kb on + strand, within CA264_14535 at 3410.883 kb on - strand, within CA264_14535 at 3410.883 kb on - strand, within CA264_14535 at 3410.883 kb on - strand, within CA264_14535 at 3410.884 kb on + strand, within CA264_14535 at 3410.884 kb on + strand, within CA264_14535 at 3411.000 kb on + strand, within CA264_14535 at 3411.098 kb on + strand at 3411.143 kb on + strand at 3411.146 kb on - strand at 3411.243 kb on + strand at 3411.243 kb on + strand at 3411.243 kb on + strand at 3411.243 kb on + strand at 3411.244 kb on - strand at 3411.244 kb on - strand at 3411.244 kb on - strand at 3411.256 kb on - strand at 3411.302 kb on - strand at 3411.312 kb on + strand at 3411.346 kb on + strand at 3411.415 kb on + strand at 3411.424 kb on + strand at 3411.469 kb on + strand at 3411.469 kb on + strand at 3411.470 kb on - strand at 3411.478 kb on - strand at 3411.481 kb on + strand at 3411.481 kb on + strand at 3411.482 kb on - strand at 3411.482 kb on - strand at 3411.487 kb on - strand at 3411.531 kb on + strand at 3411.667 kb on + strand at 3411.667 kb on + strand at 3411.667 kb on + strand at 3411.667 kb on + strand at 3411.668 kb on - strand at 3411.669 kb on + strand at 3411.669 kb on + strand at 3411.670 kb on - strand at 3411.671 kb on + strand at 3411.672 kb on - strand at 3411.676 kb on - strand at 3411.676 kb on - strand at 3411.929 kb on + strand, within CA264_14540 at 3412.196 kb on + strand, within CA264_14540 at 3412.218 kb on - strand, within CA264_14540 at 3412.268 kb on - strand, within CA264_14540 at 3412.268 kb on - strand, within CA264_14540 at 3412.319 kb on + strand, within CA264_14540 at 3412.468 kb on - strand, within CA264_14540 at 3412.848 kb on + strand, within CA264_14540 at 3412.856 kb on - strand, within CA264_14540 at 3413.105 kb on + strand, within CA264_14540 at 3413.195 kb on - strand, within CA264_14540 at 3413.195 kb on - strand, within CA264_14540 at 3413.233 kb on - strand, within CA264_14540 at 3413.259 kb on + strand, within CA264_14540 at 3413.260 kb on - strand, within CA264_14540 at 3413.281 kb on + strand, within CA264_14540 at 3413.382 kb on + strand, within CA264_14540 at 3413.674 kb on + strand at 3413.752 kb on - strand at 3413.756 kb on + strand at 3413.757 kb on - strand at 3413.765 kb on + strand at 3413.765 kb on + strand at 3413.769 kb on + strand at 3414.367 kb on + strand at 3414.367 kb on + strand at 3414.367 kb on + strand at 3414.368 kb on - strand at 3414.368 kb on - strand at 3414.369 kb on + strand at 3414.370 kb on - strand at 3414.428 kb on + strand at 3414.428 kb on + strand at 3414.517 kb on + strand at 3414.517 kb on + strand at 3414.518 kb on - strand at 3414.518 kb on - strand at 3414.549 kb on + strand at 3414.549 kb on + strand at 3414.549 kb on + strand at 3414.550 kb on - strand at 3414.550 kb on - strand at 3414.550 kb on - strand at 3414.551 kb on + strand at 3414.637 kb on + strand at 3414.661 kb on + strand at 3414.661 kb on + strand at 3414.662 kb on - strand at 3414.696 kb on - strand at 3414.724 kb on + strand at 3414.724 kb on + strand at 3414.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 3,410,504 + CA264_14535 0.52 -0.4 3,410,504 + CA264_14535 0.52 +0.0 3,410,504 + CA264_14535 0.52 -0.5 3,410,505 - CA264_14535 0.52 -1.4 3,410,561 + CA264_14535 0.56 +0.4 3,410,561 + CA264_14535 0.56 -0.8 3,410,571 + CA264_14535 0.56 +1.2 3,410,571 + CA264_14535 0.56 +0.1 3,410,572 - CA264_14535 0.57 -0.7 3,410,688 - CA264_14535 0.64 -0.3 3,410,688 - CA264_14535 0.64 -0.5 3,410,690 - CA264_14535 0.64 +0.0 3,410,752 + CA264_14535 0.68 -0.7 3,410,753 - CA264_14535 0.68 -0.6 3,410,878 + CA264_14535 0.77 -0.1 3,410,882 + CA264_14535 0.77 -0.1 3,410,882 + CA264_14535 0.77 +0.1 3,410,883 - CA264_14535 0.77 +0.1 3,410,883 - CA264_14535 0.77 -0.7 3,410,883 - CA264_14535 0.77 +0.4 3,410,884 + CA264_14535 0.77 +0.5 3,410,884 + CA264_14535 0.77 -2.9 3,411,000 + CA264_14535 0.85 -0.9 3,411,098 + +0.2 3,411,143 + -1.1 3,411,146 - +0.8 3,411,243 + -1.4 3,411,243 + -0.6 3,411,243 + -0.4 3,411,243 + +0.8 3,411,244 - -0.2 3,411,244 - +0.7 3,411,244 - -2.0 3,411,256 - +0.3 3,411,302 - -0.2 3,411,312 + -0.3 3,411,346 + +0.0 3,411,415 + +0.3 3,411,424 + -0.8 3,411,469 + +0.1 3,411,469 + +0.8 3,411,470 - +0.3 3,411,478 - -0.7 3,411,481 + +1.8 3,411,481 + +1.0 3,411,482 - -0.3 3,411,482 - +0.8 3,411,487 - -0.4 3,411,531 + -4.0 3,411,667 + -0.8 3,411,667 + -3.5 3,411,667 + -1.8 3,411,667 + -3.9 3,411,668 - -3.1 3,411,669 + -2.5 3,411,669 + -1.0 3,411,670 - +0.0 3,411,671 + -1.2 3,411,672 - -3.2 3,411,676 - -3.5 3,411,676 - -2.9 3,411,929 + CA264_14540 0.19 -2.9 3,412,196 + CA264_14540 0.31 -1.4 3,412,218 - CA264_14540 0.32 -4.6 3,412,268 - CA264_14540 0.34 -2.0 3,412,268 - CA264_14540 0.34 -3.2 3,412,319 + CA264_14540 0.36 -4.8 3,412,468 - CA264_14540 0.43 -4.7 3,412,848 + CA264_14540 0.59 -2.3 3,412,856 - CA264_14540 0.60 -4.0 3,413,105 + CA264_14540 0.71 -1.4 3,413,195 - CA264_14540 0.75 -1.0 3,413,195 - CA264_14540 0.75 -1.2 3,413,233 - CA264_14540 0.76 -2.1 3,413,259 + CA264_14540 0.77 -2.2 3,413,260 - CA264_14540 0.77 -2.1 3,413,281 + CA264_14540 0.78 -1.0 3,413,382 + CA264_14540 0.83 -0.2 3,413,674 + -3.0 3,413,752 - -1.6 3,413,756 + -0.7 3,413,757 - -1.8 3,413,765 + -0.2 3,413,765 + +0.3 3,413,769 + -1.2 3,414,367 + +0.9 3,414,367 + -0.3 3,414,367 + +0.9 3,414,368 - -0.8 3,414,368 - -0.7 3,414,369 + -1.6 3,414,370 - -0.1 3,414,428 + -0.3 3,414,428 + -0.4 3,414,517 + +0.2 3,414,517 + -0.9 3,414,518 - -0.1 3,414,518 - -1.6 3,414,549 + +1.7 3,414,549 + -0.2 3,414,549 + +0.9 3,414,550 - -0.5 3,414,550 - +0.1 3,414,550 - +0.1 3,414,551 + +0.9 3,414,637 + +0.6 3,414,661 + +0.8 3,414,661 + +0.1 3,414,662 - -0.7 3,414,696 - -0.4 3,414,724 + -0.8 3,414,724 + -0.1 3,414,747 - -1.5
Or see this region's nucleotide sequence