Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14180

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14170 and CA264_14175 are separated by 207 nucleotidesCA264_14175 and CA264_14180 are separated by 138 nucleotidesCA264_14180 and CA264_14185 are separated by 139 nucleotidesCA264_14185 and CA264_14190 are separated by 74 nucleotides CA264_14170: CA264_14170 - FAD-dependent oxidoreductase, at 3,327,878 to 3,329,224 _14170 CA264_14175: CA264_14175 - hypothetical protein, at 3,329,432 to 3,330,058 _14175 CA264_14180: CA264_14180 - transcriptional regulator, at 3,330,197 to 3,330,583 _14180 CA264_14185: CA264_14185 - noncanonical pyrimidine nucleotidase, YjjG family, at 3,330,723 to 3,331,424 _14185 CA264_14190: CA264_14190 - hypothetical protein, at 3,331,499 to 3,331,918 _14190 Position (kb) 3330 3331Strain fitness (log2 ratio) -2 -1 0 1 2at 3329.198 kb on - strandat 3329.205 kb on - strandat 3329.225 kb on - strandat 3329.227 kb on + strandat 3329.227 kb on + strandat 3329.227 kb on + strandat 3329.228 kb on - strandat 3329.228 kb on - strandat 3329.283 kb on + strandat 3329.284 kb on - strandat 3329.382 kb on + strandat 3329.382 kb on + strandat 3329.382 kb on + strandat 3329.382 kb on + strandat 3329.383 kb on - strandat 3329.383 kb on - strandat 3329.383 kb on - strandat 3329.383 kb on - strandat 3329.541 kb on - strand, within CA264_14175at 3329.686 kb on + strand, within CA264_14175at 3329.720 kb on + strand, within CA264_14175at 3329.761 kb on + strand, within CA264_14175at 3329.762 kb on - strand, within CA264_14175at 3329.769 kb on + strand, within CA264_14175at 3329.769 kb on + strand, within CA264_14175at 3329.784 kb on + strand, within CA264_14175at 3329.831 kb on - strand, within CA264_14175at 3329.877 kb on + strand, within CA264_14175at 3329.917 kb on - strand, within CA264_14175at 3330.076 kb on + strandat 3330.110 kb on - strandat 3330.115 kb on - strandat 3330.120 kb on + strandat 3330.121 kb on - strandat 3330.121 kb on - strandat 3330.141 kb on - strandat 3330.185 kb on + strandat 3330.186 kb on - strandat 3330.190 kb on - strandat 3330.196 kb on + strandat 3330.419 kb on + strand, within CA264_14180at 3330.419 kb on + strand, within CA264_14180at 3330.420 kb on - strand, within CA264_14180at 3330.420 kb on - strand, within CA264_14180at 3330.422 kb on + strand, within CA264_14180at 3330.422 kb on + strand, within CA264_14180at 3330.423 kb on - strand, within CA264_14180at 3330.423 kb on - strand, within CA264_14180at 3330.513 kb on - strand, within CA264_14180at 3330.519 kb on + strand, within CA264_14180at 3330.582 kb on - strandat 3330.606 kb on - strandat 3330.606 kb on - strandat 3330.606 kb on - strandat 3330.633 kb on + strandat 3330.633 kb on + strandat 3330.634 kb on - strandat 3330.634 kb on - strandat 3330.700 kb on + strandat 3330.701 kb on - strandat 3330.733 kb on - strandat 3330.733 kb on - strandat 3330.803 kb on + strand, within CA264_14185at 3330.803 kb on + strand, within CA264_14185at 3330.827 kb on + strand, within CA264_14185at 3330.828 kb on - strand, within CA264_14185at 3330.862 kb on - strand, within CA264_14185at 3330.862 kb on - strand, within CA264_14185at 3330.870 kb on + strand, within CA264_14185at 3330.870 kb on + strand, within CA264_14185at 3330.871 kb on - strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.872 kb on + strand, within CA264_14185at 3330.873 kb on - strand, within CA264_14185at 3330.903 kb on + strand, within CA264_14185at 3330.905 kb on + strand, within CA264_14185at 3330.905 kb on + strand, within CA264_14185at 3330.905 kb on + strand, within CA264_14185at 3330.906 kb on - strand, within CA264_14185at 3330.906 kb on - strand, within CA264_14185at 3331.045 kb on + strand, within CA264_14185at 3331.075 kb on - strand, within CA264_14185at 3331.089 kb on + strand, within CA264_14185at 3331.107 kb on - strand, within CA264_14185at 3331.107 kb on - strand, within CA264_14185at 3331.202 kb on + strand, within CA264_14185at 3331.202 kb on + strand, within CA264_14185at 3331.203 kb on - strand, within CA264_14185at 3331.288 kb on - strand, within CA264_14185at 3331.299 kb on - strand, within CA264_14185at 3331.300 kb on + strand, within CA264_14185at 3331.301 kb on - strand, within CA264_14185at 3331.333 kb on + strand, within CA264_14185at 3331.383 kb on + strandat 3331.383 kb on + strandat 3331.408 kb on + strandat 3331.408 kb on + strandat 3331.409 kb on - strandat 3331.409 kb on - strandat 3331.465 kb on - strandat 3331.500 kb on + strandat 3331.501 kb on - strandat 3331.501 kb on - strandat 3331.555 kb on + strand, within CA264_14190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,329,198 - -0.4
3,329,205 - +0.1
3,329,225 - +0.3
3,329,227 + -1.5
3,329,227 + -1.9
3,329,227 + -0.8
3,329,228 - -0.5
3,329,228 - -0.4
3,329,283 + +0.4
3,329,284 - +0.2
3,329,382 + -0.3
3,329,382 + -0.0
3,329,382 + +0.7
3,329,382 + -0.4
3,329,383 - -0.3
3,329,383 - -0.8
3,329,383 - +0.3
3,329,383 - -2.0
3,329,541 - CA264_14175 0.17 -0.6
3,329,686 + CA264_14175 0.41 -1.1
3,329,720 + CA264_14175 0.46 -1.7
3,329,761 + CA264_14175 0.52 -0.0
3,329,762 - CA264_14175 0.53 +0.6
3,329,769 + CA264_14175 0.54 -1.2
3,329,769 + CA264_14175 0.54 -1.0
3,329,784 + CA264_14175 0.56 +0.2
3,329,831 - CA264_14175 0.64 -0.5
3,329,877 + CA264_14175 0.71 -0.9
3,329,917 - CA264_14175 0.77 +0.1
3,330,076 + -0.7
3,330,110 - -0.8
3,330,115 - +0.7
3,330,120 + -1.2
3,330,121 - -0.3
3,330,121 - -1.2
3,330,141 - -0.5
3,330,185 + -1.6
3,330,186 - -0.6
3,330,190 - -0.5
3,330,196 + -0.6
3,330,419 + CA264_14180 0.57 -1.7
3,330,419 + CA264_14180 0.57 -0.8
3,330,420 - CA264_14180 0.58 -1.7
3,330,420 - CA264_14180 0.58 -0.3
3,330,422 + CA264_14180 0.58 -1.8
3,330,422 + CA264_14180 0.58 -0.9
3,330,423 - CA264_14180 0.58 -0.7
3,330,423 - CA264_14180 0.58 -0.9
3,330,513 - CA264_14180 0.82 -0.5
3,330,519 + CA264_14180 0.83 -2.0
3,330,582 - -1.3
3,330,606 - +0.7
3,330,606 - -1.4
3,330,606 - -0.1
3,330,633 + -0.7
3,330,633 + -1.3
3,330,634 - -1.8
3,330,634 - +0.3
3,330,700 + -0.0
3,330,701 - -0.8
3,330,733 - +0.1
3,330,733 - -0.5
3,330,803 + CA264_14185 0.11 -1.0
3,330,803 + CA264_14185 0.11 +0.7
3,330,827 + CA264_14185 0.15 -0.5
3,330,828 - CA264_14185 0.15 +0.3
3,330,862 - CA264_14185 0.20 -1.3
3,330,862 - CA264_14185 0.20 -0.4
3,330,870 + CA264_14185 0.21 +1.6
3,330,870 + CA264_14185 0.21 +0.3
3,330,871 - CA264_14185 0.21 +0.2
3,330,872 + CA264_14185 0.21 +0.7
3,330,872 + CA264_14185 0.21 -0.3
3,330,872 + CA264_14185 0.21 +0.3
3,330,872 + CA264_14185 0.21 +0.9
3,330,873 - CA264_14185 0.21 +1.9
3,330,903 + CA264_14185 0.26 +0.3
3,330,905 + CA264_14185 0.26 +0.6
3,330,905 + CA264_14185 0.26 +0.2
3,330,905 + CA264_14185 0.26 +1.0
3,330,906 - CA264_14185 0.26 +0.8
3,330,906 - CA264_14185 0.26 +0.7
3,331,045 + CA264_14185 0.46 +0.3
3,331,075 - CA264_14185 0.50 -0.0
3,331,089 + CA264_14185 0.52 +0.2
3,331,107 - CA264_14185 0.55 -0.7
3,331,107 - CA264_14185 0.55 -0.3
3,331,202 + CA264_14185 0.68 -0.3
3,331,202 + CA264_14185 0.68 -0.3
3,331,203 - CA264_14185 0.68 -0.6
3,331,288 - CA264_14185 0.80 +0.0
3,331,299 - CA264_14185 0.82 +0.3
3,331,300 + CA264_14185 0.82 +0.2
3,331,301 - CA264_14185 0.82 +1.3
3,331,333 + CA264_14185 0.87 +0.1
3,331,383 + +0.9
3,331,383 + +0.7
3,331,408 + +0.4
3,331,408 + -2.4
3,331,409 - -0.6
3,331,409 - +0.4
3,331,465 - -0.7
3,331,500 + -0.3
3,331,501 - -1.9
3,331,501 - +0.1
3,331,555 + CA264_14190 0.13 -0.2

Or see this region's nucleotide sequence