Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13990

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_13980 and CA264_13985 are separated by 19 nucleotidesCA264_13985 and CA264_13990 are separated by 97 nucleotidesCA264_13990 and CA264_13995 are separated by 3 nucleotides CA264_13980: CA264_13980 - alpha-glucuronidase, at 3,271,746 to 3,273,911 _13980 CA264_13985: CA264_13985 - 3-oxoacyl-ACP reductase, at 3,273,931 to 3,274,689 _13985 CA264_13990: CA264_13990 - 1,4-beta-xylanase, at 3,274,787 to 3,275,965 _13990 CA264_13995: CA264_13995 - carbohydrate kinase, at 3,275,969 to 3,277,453 _13995 Position (kb) 3274 3275 3276Strain fitness (log2 ratio) -1 0 1 2at 3273.804 kb on + strandat 3273.822 kb on - strandat 3273.860 kb on + strandat 3273.908 kb on - strandat 3273.909 kb on + strandat 3273.915 kb on + strandat 3273.916 kb on - strandat 3273.916 kb on - strandat 3273.916 kb on - strandat 3273.916 kb on - strandat 3273.926 kb on + strandat 3273.926 kb on + strandat 3273.926 kb on + strandat 3273.927 kb on - strandat 3273.940 kb on - strandat 3273.946 kb on - strandat 3274.105 kb on + strand, within CA264_13985at 3274.209 kb on + strand, within CA264_13985at 3274.210 kb on - strand, within CA264_13985at 3274.228 kb on - strand, within CA264_13985at 3274.263 kb on - strand, within CA264_13985at 3274.266 kb on + strand, within CA264_13985at 3274.267 kb on - strand, within CA264_13985at 3274.267 kb on - strand, within CA264_13985at 3274.370 kb on - strand, within CA264_13985at 3274.577 kb on + strand, within CA264_13985at 3274.609 kb on + strand, within CA264_13985at 3274.610 kb on - strand, within CA264_13985at 3274.610 kb on - strand, within CA264_13985at 3274.612 kb on + strand, within CA264_13985at 3274.613 kb on - strand, within CA264_13985at 3275.006 kb on - strand, within CA264_13990at 3275.081 kb on + strand, within CA264_13990at 3275.082 kb on - strand, within CA264_13990at 3275.150 kb on - strand, within CA264_13990at 3275.398 kb on + strand, within CA264_13990at 3275.399 kb on - strand, within CA264_13990at 3275.426 kb on + strand, within CA264_13990at 3275.427 kb on - strand, within CA264_13990at 3275.435 kb on + strand, within CA264_13990at 3275.437 kb on + strand, within CA264_13990at 3275.437 kb on + strand, within CA264_13990at 3275.608 kb on - strand, within CA264_13990at 3275.699 kb on + strand, within CA264_13990at 3275.699 kb on + strand, within CA264_13990at 3275.699 kb on + strand, within CA264_13990at 3275.700 kb on - strand, within CA264_13990at 3275.810 kb on - strand, within CA264_13990at 3275.900 kb on + strandat 3275.901 kb on - strandat 3275.963 kb on + strandat 3275.963 kb on + strandat 3275.964 kb on - strandat 3275.966 kb on + strandat 3275.967 kb on - strandat 3275.976 kb on + strandat 3275.985 kb on + strandat 3275.985 kb on + strandat 3275.986 kb on - strandat 3275.986 kb on - strandat 3275.986 kb on - strandat 3275.986 kb on - strandat 3275.989 kb on + strandat 3275.989 kb on + strandat 3275.990 kb on - strandat 3275.992 kb on - strandat 3276.021 kb on + strandat 3276.083 kb on - strandat 3276.150 kb on + strand, within CA264_13995at 3276.422 kb on + strand, within CA264_13995at 3276.564 kb on - strand, within CA264_13995at 3276.566 kb on + strand, within CA264_13995at 3276.569 kb on - strand, within CA264_13995at 3276.797 kb on + strand, within CA264_13995at 3276.798 kb on - strand, within CA264_13995at 3276.938 kb on + strand, within CA264_13995

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
3,273,804 + +0.5
3,273,822 - +0.6
3,273,860 + +0.4
3,273,908 - +0.6
3,273,909 + +1.7
3,273,915 + +2.0
3,273,916 - -0.3
3,273,916 - +0.9
3,273,916 - -0.1
3,273,916 - +1.4
3,273,926 + +0.2
3,273,926 + +0.9
3,273,926 + -0.1
3,273,927 - +0.5
3,273,940 - +0.4
3,273,946 - +0.6
3,274,105 + CA264_13985 0.23 +1.0
3,274,209 + CA264_13985 0.37 -0.7
3,274,210 - CA264_13985 0.37 -1.5
3,274,228 - CA264_13985 0.39 +0.8
3,274,263 - CA264_13985 0.44 +0.3
3,274,266 + CA264_13985 0.44 +0.7
3,274,267 - CA264_13985 0.44 +0.2
3,274,267 - CA264_13985 0.44 +0.5
3,274,370 - CA264_13985 0.58 +0.2
3,274,577 + CA264_13985 0.85 -0.1
3,274,609 + CA264_13985 0.89 -0.3
3,274,610 - CA264_13985 0.89 +0.3
3,274,610 - CA264_13985 0.89 +0.4
3,274,612 + CA264_13985 0.90 +0.1
3,274,613 - CA264_13985 0.90 +0.8
3,275,006 - CA264_13990 0.19 +0.3
3,275,081 + CA264_13990 0.25 +0.4
3,275,082 - CA264_13990 0.25 +0.0
3,275,150 - CA264_13990 0.31 -0.0
3,275,398 + CA264_13990 0.52 +0.1
3,275,399 - CA264_13990 0.52 -0.8
3,275,426 + CA264_13990 0.54 +0.3
3,275,427 - CA264_13990 0.54 +0.2
3,275,435 + CA264_13990 0.55 +0.6
3,275,437 + CA264_13990 0.55 +0.8
3,275,437 + CA264_13990 0.55 +1.0
3,275,608 - CA264_13990 0.70 +1.3
3,275,699 + CA264_13990 0.77 +0.8
3,275,699 + CA264_13990 0.77 -0.0
3,275,699 + CA264_13990 0.77 +1.5
3,275,700 - CA264_13990 0.77 -0.2
3,275,810 - CA264_13990 0.87 +0.3
3,275,900 + +0.6
3,275,901 - +0.6
3,275,963 + +0.6
3,275,963 + +1.3
3,275,964 - +0.3
3,275,966 + +0.3
3,275,967 - +1.0
3,275,976 + +0.7
3,275,985 + +1.1
3,275,985 + -0.3
3,275,986 - +0.8
3,275,986 - +0.7
3,275,986 - -1.3
3,275,986 - +0.3
3,275,989 + +0.3
3,275,989 + +0.3
3,275,990 - +0.1
3,275,992 - -1.2
3,276,021 + +2.3
3,276,083 - +0.5
3,276,150 + CA264_13995 0.12 +0.9
3,276,422 + CA264_13995 0.31 +0.7
3,276,564 - CA264_13995 0.40 +0.3
3,276,566 + CA264_13995 0.40 +0.6
3,276,569 - CA264_13995 0.40 +0.4
3,276,797 + CA264_13995 0.56 -0.9
3,276,798 - CA264_13995 0.56 +0.6
3,276,938 + CA264_13995 0.65 +0.3

Or see this region's nucleotide sequence