Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13080

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13070 and CA264_13075 overlap by 1 nucleotidesCA264_13075 and CA264_13080 are separated by 151 nucleotidesCA264_13080 and CA264_13085 are separated by 370 nucleotides CA264_13070: CA264_13070 - ribonuclease bn, at 3,047,973 to 3,048,944 _13070 CA264_13075: CA264_13075 - thioesterase, at 3,048,944 to 3,049,354 _13075 CA264_13080: CA264_13080 - aminodeoxychorismate lyase, at 3,049,506 to 3,050,582 _13080 CA264_13085: CA264_13085 - methylmalonyl-CoA carboxyltransferase, at 3,050,953 to 3,052,512 _13085 Position (kb) 3049 3050 3051Strain fitness (log2 ratio) -3 -2 -1 0 1at 3048.604 kb on - strand, within CA264_13070at 3048.626 kb on - strand, within CA264_13070at 3048.678 kb on - strand, within CA264_13070at 3048.711 kb on + strand, within CA264_13070at 3048.755 kb on + strand, within CA264_13070at 3048.755 kb on + strand, within CA264_13070at 3048.782 kb on - strand, within CA264_13070at 3048.845 kb on - strand, within CA264_13070at 3048.900 kb on - strandat 3048.950 kb on - strandat 3048.967 kb on + strandat 3048.974 kb on + strandat 3048.974 kb on + strandat 3048.975 kb on - strandat 3048.975 kb on - strandat 3049.068 kb on + strand, within CA264_13075at 3049.068 kb on + strand, within CA264_13075at 3049.069 kb on - strand, within CA264_13075at 3049.078 kb on - strand, within CA264_13075at 3049.078 kb on - strand, within CA264_13075at 3049.089 kb on - strand, within CA264_13075at 3049.115 kb on + strand, within CA264_13075at 3049.220 kb on - strand, within CA264_13075at 3049.222 kb on - strand, within CA264_13075at 3049.222 kb on - strand, within CA264_13075at 3049.222 kb on - strand, within CA264_13075at 3049.270 kb on - strand, within CA264_13075at 3049.279 kb on - strand, within CA264_13075at 3049.290 kb on + strand, within CA264_13075at 3049.297 kb on - strand, within CA264_13075at 3049.332 kb on - strandat 3049.338 kb on - strandat 3049.357 kb on + strandat 3049.375 kb on - strandat 3049.377 kb on + strandat 3049.378 kb on - strandat 3049.390 kb on + strandat 3049.428 kb on + strandat 3049.624 kb on + strand, within CA264_13080at 3049.624 kb on + strand, within CA264_13080at 3049.631 kb on - strand, within CA264_13080at 3049.631 kb on - strand, within CA264_13080at 3049.631 kb on - strand, within CA264_13080at 3049.717 kb on + strand, within CA264_13080at 3049.843 kb on + strand, within CA264_13080at 3049.981 kb on + strand, within CA264_13080at 3050.587 kb on + strandat 3050.587 kb on + strandat 3050.587 kb on + strandat 3050.587 kb on + strandat 3050.588 kb on - strandat 3050.607 kb on + strandat 3050.608 kb on - strandat 3050.608 kb on - strandat 3050.608 kb on - strandat 3050.608 kb on - strandat 3050.611 kb on + strandat 3050.611 kb on + strandat 3050.611 kb on + strandat 3050.611 kb on + strandat 3050.612 kb on - strandat 3050.612 kb on - strandat 3050.612 kb on - strandat 3050.661 kb on + strandat 3050.665 kb on + strandat 3050.853 kb on + strandat 3050.853 kb on + strandat 3050.854 kb on - strandat 3050.856 kb on - strandat 3050.856 kb on - strandat 3050.856 kb on - strandat 3050.903 kb on + strandat 3050.924 kb on + strandat 3051.081 kb on + strandat 3051.081 kb on + strandat 3051.119 kb on + strand, within CA264_13085at 3051.119 kb on + strand, within CA264_13085at 3051.120 kb on - strand, within CA264_13085at 3051.123 kb on + strand, within CA264_13085at 3051.124 kb on - strand, within CA264_13085at 3051.124 kb on - strand, within CA264_13085at 3051.169 kb on + strand, within CA264_13085at 3051.169 kb on + strand, within CA264_13085at 3051.227 kb on - strand, within CA264_13085at 3051.483 kb on - strand, within CA264_13085at 3051.484 kb on + strand, within CA264_13085at 3051.484 kb on + strand, within CA264_13085at 3051.508 kb on - strand, within CA264_13085at 3051.532 kb on + strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.533 kb on - strand, within CA264_13085at 3051.534 kb on + strand, within CA264_13085at 3051.534 kb on + strand, within CA264_13085at 3051.534 kb on + strand, within CA264_13085at 3051.535 kb on - strand, within CA264_13085

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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3,048,604 - CA264_13070 0.65 -2.4
3,048,626 - CA264_13070 0.67 -1.8
3,048,678 - CA264_13070 0.73 -2.1
3,048,711 + CA264_13070 0.76 -2.3
3,048,755 + CA264_13070 0.80 -2.9
3,048,755 + CA264_13070 0.80 -0.1
3,048,782 - CA264_13070 0.83 -2.1
3,048,845 - CA264_13070 0.90 -0.3
3,048,900 - -0.8
3,048,950 - +0.7
3,048,967 + -0.0
3,048,974 + +0.3
3,048,974 + +0.3
3,048,975 - +0.1
3,048,975 - -0.1
3,049,068 + CA264_13075 0.30 +0.3
3,049,068 + CA264_13075 0.30 -1.9
3,049,069 - CA264_13075 0.30 -0.2
3,049,078 - CA264_13075 0.33 -0.2
3,049,078 - CA264_13075 0.33 -0.7
3,049,089 - CA264_13075 0.35 -0.2
3,049,115 + CA264_13075 0.42 -0.1
3,049,220 - CA264_13075 0.67 -0.2
3,049,222 - CA264_13075 0.68 +1.3
3,049,222 - CA264_13075 0.68 +0.4
3,049,222 - CA264_13075 0.68 +0.2
3,049,270 - CA264_13075 0.79 +0.4
3,049,279 - CA264_13075 0.82 +0.4
3,049,290 + CA264_13075 0.84 -0.2
3,049,297 - CA264_13075 0.86 +0.8
3,049,332 - +0.3
3,049,338 - -1.2
3,049,357 + -0.1
3,049,375 - +1.1
3,049,377 + -0.0
3,049,378 - +0.1
3,049,390 + -0.9
3,049,428 + -2.2
3,049,624 + CA264_13080 0.11 -0.4
3,049,624 + CA264_13080 0.11 -1.9
3,049,631 - CA264_13080 0.12 -3.5
3,049,631 - CA264_13080 0.12 -1.3
3,049,631 - CA264_13080 0.12 +0.6
3,049,717 + CA264_13080 0.20 -1.2
3,049,843 + CA264_13080 0.31 -0.4
3,049,981 + CA264_13080 0.44 -0.4
3,050,587 + +0.4
3,050,587 + +0.8
3,050,587 + -1.5
3,050,587 + -1.1
3,050,588 - +0.4
3,050,607 + -0.3
3,050,608 - -0.2
3,050,608 - -2.5
3,050,608 - +0.6
3,050,608 - +1.3
3,050,611 + -2.8
3,050,611 + -1.0
3,050,611 + -0.5
3,050,611 + +0.2
3,050,612 - +0.4
3,050,612 - -1.0
3,050,612 - -0.9
3,050,661 + +0.3
3,050,665 + -0.7
3,050,853 + -0.7
3,050,853 + -0.6
3,050,854 - -1.1
3,050,856 - -0.8
3,050,856 - +1.5
3,050,856 - -0.0
3,050,903 + +0.1
3,050,924 + -0.8
3,051,081 + -1.6
3,051,081 + +1.4
3,051,119 + CA264_13085 0.11 +0.2
3,051,119 + CA264_13085 0.11 -1.0
3,051,120 - CA264_13085 0.11 -0.1
3,051,123 + CA264_13085 0.11 -1.2
3,051,124 - CA264_13085 0.11 -0.8
3,051,124 - CA264_13085 0.11 -0.2
3,051,169 + CA264_13085 0.14 -0.7
3,051,169 + CA264_13085 0.14 +1.2
3,051,227 - CA264_13085 0.18 +1.0
3,051,483 - CA264_13085 0.34 -0.1
3,051,484 + CA264_13085 0.34 -0.4
3,051,484 + CA264_13085 0.34 +1.0
3,051,508 - CA264_13085 0.36 +0.3
3,051,532 + CA264_13085 0.37 +1.3
3,051,533 - CA264_13085 0.37 -0.2
3,051,533 - CA264_13085 0.37 +0.2
3,051,533 - CA264_13085 0.37 -0.0
3,051,533 - CA264_13085 0.37 +0.9
3,051,534 + CA264_13085 0.37 +0.4
3,051,534 + CA264_13085 0.37 +1.1
3,051,534 + CA264_13085 0.37 +0.9
3,051,535 - CA264_13085 0.37 -0.2

Or see this region's nucleotide sequence