Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12715 and CA264_12720 are separated by 295 nucleotides CA264_12720 and CA264_12725 are separated by 156 nucleotides
CA264_12715: CA264_12715 - peptidase M61, at 2,963,463 to 2,965,295
_12715
CA264_12720: CA264_12720 - hypothetical protein, at 2,965,591 to 2,966,046
_12720
CA264_12725: CA264_12725 - hypothetical protein, at 2,966,203 to 2,967,216
_12725
Position (kb)
2965
2966
2967 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2964.650 kb on + strand, within CA264_12715 at 2964.657 kb on + strand, within CA264_12715 at 2964.660 kb on + strand, within CA264_12715 at 2964.661 kb on - strand, within CA264_12715 at 2964.666 kb on + strand, within CA264_12715 at 2964.666 kb on + strand, within CA264_12715 at 2964.667 kb on - strand, within CA264_12715 at 2964.715 kb on - strand, within CA264_12715 at 2964.759 kb on + strand, within CA264_12715 at 2964.760 kb on - strand, within CA264_12715 at 2964.929 kb on + strand, within CA264_12715 at 2965.009 kb on + strand, within CA264_12715 at 2965.010 kb on - strand, within CA264_12715 at 2965.026 kb on - strand, within CA264_12715 at 2965.037 kb on - strand, within CA264_12715 at 2965.149 kb on - strand at 2965.195 kb on + strand at 2965.210 kb on + strand at 2965.240 kb on + strand at 2965.407 kb on + strand at 2965.415 kb on + strand at 2965.415 kb on + strand at 2965.418 kb on + strand at 2965.580 kb on - strand at 2965.630 kb on + strand at 2965.631 kb on - strand at 2965.635 kb on - strand at 2965.635 kb on - strand at 2965.635 kb on - strand at 2965.694 kb on - strand, within CA264_12720 at 2965.711 kb on + strand, within CA264_12720 at 2965.711 kb on + strand, within CA264_12720 at 2965.711 kb on + strand, within CA264_12720 at 2965.753 kb on + strand, within CA264_12720 at 2965.753 kb on + strand, within CA264_12720 at 2965.754 kb on - strand, within CA264_12720 at 2965.778 kb on - strand, within CA264_12720 at 2965.888 kb on + strand, within CA264_12720 at 2965.948 kb on - strand, within CA264_12720 at 2966.048 kb on + strand at 2966.069 kb on - strand at 2966.175 kb on - strand at 2966.176 kb on + strand at 2966.178 kb on + strand at 2966.214 kb on + strand at 2966.256 kb on + strand at 2966.270 kb on - strand at 2966.398 kb on + strand, within CA264_12725 at 2966.398 kb on + strand, within CA264_12725 at 2966.398 kb on + strand, within CA264_12725 at 2966.499 kb on + strand, within CA264_12725 at 2966.597 kb on + strand, within CA264_12725 at 2966.597 kb on + strand, within CA264_12725 at 2966.598 kb on - strand, within CA264_12725 at 2966.598 kb on - strand, within CA264_12725 at 2966.673 kb on - strand, within CA264_12725 at 2966.705 kb on + strand, within CA264_12725 at 2966.705 kb on + strand, within CA264_12725 at 2966.705 kb on + strand, within CA264_12725 at 2966.706 kb on - strand, within CA264_12725 at 2966.762 kb on - strand, within CA264_12725 at 2966.890 kb on + strand, within CA264_12725 at 2966.923 kb on + strand, within CA264_12725 at 2966.933 kb on + strand, within CA264_12725 at 2966.984 kb on - strand, within CA264_12725 at 2966.984 kb on - strand, within CA264_12725
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,964,650 + CA264_12715 0.65 +0.7 2,964,657 + CA264_12715 0.65 -0.4 2,964,660 + CA264_12715 0.65 -0.5 2,964,661 - CA264_12715 0.65 -0.6 2,964,666 + CA264_12715 0.66 +0.3 2,964,666 + CA264_12715 0.66 -1.9 2,964,667 - CA264_12715 0.66 +0.4 2,964,715 - CA264_12715 0.68 +0.2 2,964,759 + CA264_12715 0.71 +2.6 2,964,760 - CA264_12715 0.71 +1.9 2,964,929 + CA264_12715 0.80 -0.9 2,965,009 + CA264_12715 0.84 +0.9 2,965,010 - CA264_12715 0.84 -0.6 2,965,026 - CA264_12715 0.85 -0.3 2,965,037 - CA264_12715 0.86 -0.1 2,965,149 - -1.3 2,965,195 + +0.0 2,965,210 + -0.2 2,965,240 + -0.3 2,965,407 + +0.1 2,965,415 + -0.4 2,965,415 + +0.1 2,965,418 + -0.1 2,965,580 - -0.7 2,965,630 + +0.4 2,965,631 - -0.4 2,965,635 - -0.5 2,965,635 - +0.2 2,965,635 - -0.4 2,965,694 - CA264_12720 0.23 +0.1 2,965,711 + CA264_12720 0.26 +0.2 2,965,711 + CA264_12720 0.26 -0.8 2,965,711 + CA264_12720 0.26 +0.1 2,965,753 + CA264_12720 0.36 +0.1 2,965,753 + CA264_12720 0.36 -0.6 2,965,754 - CA264_12720 0.36 -1.7 2,965,778 - CA264_12720 0.41 -0.4 2,965,888 + CA264_12720 0.65 -1.0 2,965,948 - CA264_12720 0.78 +0.2 2,966,048 + +0.7 2,966,069 - -1.1 2,966,175 - -0.3 2,966,176 + +0.6 2,966,178 + -0.3 2,966,214 + -0.6 2,966,256 + +0.2 2,966,270 - -1.0 2,966,398 + CA264_12725 0.19 +0.4 2,966,398 + CA264_12725 0.19 +1.2 2,966,398 + CA264_12725 0.19 -0.2 2,966,499 + CA264_12725 0.29 +1.2 2,966,597 + CA264_12725 0.39 -0.3 2,966,597 + CA264_12725 0.39 +0.4 2,966,598 - CA264_12725 0.39 -0.7 2,966,598 - CA264_12725 0.39 -0.7 2,966,673 - CA264_12725 0.46 -1.8 2,966,705 + CA264_12725 0.50 -0.2 2,966,705 + CA264_12725 0.50 +0.4 2,966,705 + CA264_12725 0.50 +1.3 2,966,706 - CA264_12725 0.50 +1.0 2,966,762 - CA264_12725 0.55 -0.3 2,966,890 + CA264_12725 0.68 -1.4 2,966,923 + CA264_12725 0.71 +0.2 2,966,933 + CA264_12725 0.72 -0.0 2,966,984 - CA264_12725 0.77 +0.8 2,966,984 - CA264_12725 0.77 +0.0
Or see this region's nucleotide sequence