Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12575 and CA264_12580 are separated by 51 nucleotides CA264_12580 and CA264_12585 are separated by 222 nucleotides CA264_12585 and CA264_12590 are separated by 189 nucleotides
CA264_12575: CA264_12575 - hypothetical protein, at 2,934,781 to 2,935,296
_12575
CA264_12580: CA264_12580 - hypothetical protein, at 2,935,348 to 2,935,959
_12580
CA264_12585: CA264_12585 - molecular chaperone DnaK, at 2,936,182 to 2,938,110
_12585
CA264_12590: CA264_12590 - hypothetical protein, at 2,938,300 to 2,939,556
_12590
Position (kb)
2936
2937
2938
2939 Strain fitness (log2 ratio)
-1
0
1
2 at 2935.199 kb on - strand, within CA264_12575 at 2935.201 kb on + strand, within CA264_12575 at 2935.201 kb on + strand, within CA264_12575 at 2935.226 kb on - strand, within CA264_12575 at 2935.226 kb on - strand, within CA264_12575 at 2935.241 kb on - strand, within CA264_12575 at 2935.293 kb on - strand at 2935.293 kb on - strand at 2935.295 kb on - strand at 2935.295 kb on - strand at 2935.295 kb on - strand at 2935.325 kb on + strand at 2935.326 kb on - strand at 2935.326 kb on - strand at 2935.327 kb on + strand at 2935.327 kb on + strand at 2935.328 kb on - strand at 2935.332 kb on + strand at 2935.335 kb on - strand at 2935.355 kb on + strand at 2935.358 kb on + strand at 2935.358 kb on + strand at 2935.359 kb on - strand at 2935.359 kb on - strand at 2935.359 kb on - strand at 2935.412 kb on + strand, within CA264_12580 at 2935.412 kb on + strand, within CA264_12580 at 2935.413 kb on - strand, within CA264_12580 at 2935.474 kb on - strand, within CA264_12580 at 2935.573 kb on + strand, within CA264_12580 at 2935.574 kb on - strand, within CA264_12580 at 2935.574 kb on - strand, within CA264_12580 at 2935.635 kb on - strand, within CA264_12580 at 2935.753 kb on + strand, within CA264_12580 at 2935.754 kb on - strand, within CA264_12580 at 2935.754 kb on - strand, within CA264_12580 at 2935.754 kb on - strand, within CA264_12580 at 2935.758 kb on + strand, within CA264_12580 at 2935.758 kb on + strand, within CA264_12580 at 2935.790 kb on - strand, within CA264_12580 at 2935.790 kb on - strand, within CA264_12580 at 2935.790 kb on - strand, within CA264_12580 at 2935.859 kb on - strand, within CA264_12580 at 2936.026 kb on + strand at 2936.079 kb on - strand at 2936.079 kb on - strand at 2936.079 kb on - strand at 2936.086 kb on + strand at 2936.099 kb on - strand at 2936.133 kb on - strand at 2936.136 kb on - strand at 2938.109 kb on - strand at 2938.118 kb on - strand at 2938.118 kb on - strand at 2938.174 kb on - strand at 2938.281 kb on + strand at 2938.287 kb on + strand at 2938.299 kb on + strand at 2938.300 kb on - strand at 2938.300 kb on - strand at 2938.312 kb on + strand at 2938.312 kb on + strand at 2938.322 kb on + strand at 2938.380 kb on + strand at 2938.381 kb on - strand at 2938.412 kb on - strand at 2938.415 kb on + strand at 2938.415 kb on + strand at 2938.415 kb on + strand at 2938.415 kb on + strand at 2938.416 kb on - strand at 2938.416 kb on - strand at 2938.416 kb on - strand at 2938.453 kb on - strand, within CA264_12590 at 2938.491 kb on + strand, within CA264_12590 at 2938.549 kb on - strand, within CA264_12590 at 2938.556 kb on + strand, within CA264_12590 at 2938.599 kb on + strand, within CA264_12590 at 2938.600 kb on - strand, within CA264_12590 at 2938.611 kb on - strand, within CA264_12590 at 2938.628 kb on + strand, within CA264_12590 at 2938.629 kb on - strand, within CA264_12590 at 2938.630 kb on + strand, within CA264_12590 at 2938.630 kb on + strand, within CA264_12590 at 2938.630 kb on + strand, within CA264_12590 at 2938.630 kb on + strand, within CA264_12590 at 2938.631 kb on - strand, within CA264_12590 at 2938.667 kb on - strand, within CA264_12590 at 2938.714 kb on + strand, within CA264_12590 at 2938.715 kb on - strand, within CA264_12590 at 2938.747 kb on + strand, within CA264_12590 at 2938.747 kb on + strand, within CA264_12590 at 2938.747 kb on + strand, within CA264_12590 at 2938.748 kb on - strand, within CA264_12590 at 2938.782 kb on - strand, within CA264_12590 at 2938.782 kb on - strand, within CA264_12590 at 2938.827 kb on + strand, within CA264_12590 at 2938.863 kb on + strand, within CA264_12590 at 2938.876 kb on + strand, within CA264_12590 at 2938.877 kb on - strand, within CA264_12590 at 2938.877 kb on - strand, within CA264_12590 at 2938.881 kb on + strand, within CA264_12590 at 2938.881 kb on + strand, within CA264_12590 at 2938.882 kb on - strand, within CA264_12590 at 2938.964 kb on - strand, within CA264_12590 at 2938.992 kb on + strand, within CA264_12590 at 2938.997 kb on - strand, within CA264_12590 at 2939.107 kb on + strand, within CA264_12590 at 2939.107 kb on + strand, within CA264_12590 at 2939.107 kb on + strand, within CA264_12590 at 2939.107 kb on + strand, within CA264_12590 at 2939.108 kb on - strand, within CA264_12590 at 2939.108 kb on - strand, within CA264_12590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,935,199 - CA264_12575 0.81 -1.4 2,935,201 + CA264_12575 0.81 -0.4 2,935,201 + CA264_12575 0.81 -0.3 2,935,226 - CA264_12575 0.86 -0.6 2,935,226 - CA264_12575 0.86 -0.0 2,935,241 - CA264_12575 0.89 +0.6 2,935,293 - -0.5 2,935,293 - +0.0 2,935,295 - -0.2 2,935,295 - -0.0 2,935,295 - +1.5 2,935,325 + +0.6 2,935,326 - +0.2 2,935,326 - +0.2 2,935,327 + +0.5 2,935,327 + +0.0 2,935,328 - +0.1 2,935,332 + +0.6 2,935,335 - +0.1 2,935,355 + +0.3 2,935,358 + -0.1 2,935,358 + -0.5 2,935,359 - -0.1 2,935,359 - -0.8 2,935,359 - +0.7 2,935,412 + CA264_12580 0.10 -0.3 2,935,412 + CA264_12580 0.10 -1.0 2,935,413 - CA264_12580 0.11 -0.4 2,935,474 - CA264_12580 0.21 -0.1 2,935,573 + CA264_12580 0.37 +0.4 2,935,574 - CA264_12580 0.37 -0.1 2,935,574 - CA264_12580 0.37 +0.6 2,935,635 - CA264_12580 0.47 +0.3 2,935,753 + CA264_12580 0.66 -0.4 2,935,754 - CA264_12580 0.66 -0.3 2,935,754 - CA264_12580 0.66 -0.8 2,935,754 - CA264_12580 0.66 -0.6 2,935,758 + CA264_12580 0.67 +1.6 2,935,758 + CA264_12580 0.67 -0.7 2,935,790 - CA264_12580 0.72 -1.3 2,935,790 - CA264_12580 0.72 -0.9 2,935,790 - CA264_12580 0.72 -0.1 2,935,859 - CA264_12580 0.83 -0.1 2,936,026 + -0.7 2,936,079 - -1.3 2,936,079 - -1.0 2,936,079 - -1.1 2,936,086 + -0.3 2,936,099 - -0.6 2,936,133 - -0.4 2,936,136 - +0.4 2,938,109 - -0.6 2,938,118 - -0.2 2,938,118 - -0.5 2,938,174 - -0.0 2,938,281 + -1.0 2,938,287 + +1.8 2,938,299 + -0.1 2,938,300 - +2.2 2,938,300 - +0.4 2,938,312 + -0.5 2,938,312 + +0.2 2,938,322 + +0.2 2,938,380 + -0.4 2,938,381 - -0.9 2,938,412 - -1.5 2,938,415 + -0.2 2,938,415 + -0.4 2,938,415 + +0.0 2,938,415 + -0.3 2,938,416 - -0.2 2,938,416 - -0.7 2,938,416 - +0.5 2,938,453 - CA264_12590 0.12 -0.5 2,938,491 + CA264_12590 0.15 +0.7 2,938,549 - CA264_12590 0.20 -0.9 2,938,556 + CA264_12590 0.20 -0.5 2,938,599 + CA264_12590 0.24 +1.3 2,938,600 - CA264_12590 0.24 +0.0 2,938,611 - CA264_12590 0.25 +0.4 2,938,628 + CA264_12590 0.26 -0.6 2,938,629 - CA264_12590 0.26 +0.8 2,938,630 + CA264_12590 0.26 -0.0 2,938,630 + CA264_12590 0.26 +0.3 2,938,630 + CA264_12590 0.26 -0.3 2,938,630 + CA264_12590 0.26 +0.4 2,938,631 - CA264_12590 0.26 -0.5 2,938,667 - CA264_12590 0.29 -0.4 2,938,714 + CA264_12590 0.33 -0.2 2,938,715 - CA264_12590 0.33 -0.2 2,938,747 + CA264_12590 0.36 +0.4 2,938,747 + CA264_12590 0.36 +0.3 2,938,747 + CA264_12590 0.36 +0.1 2,938,748 - CA264_12590 0.36 +0.1 2,938,782 - CA264_12590 0.38 +0.4 2,938,782 - CA264_12590 0.38 +0.3 2,938,827 + CA264_12590 0.42 +0.2 2,938,863 + CA264_12590 0.45 -0.8 2,938,876 + CA264_12590 0.46 -0.2 2,938,877 - CA264_12590 0.46 +0.4 2,938,877 - CA264_12590 0.46 -0.2 2,938,881 + CA264_12590 0.46 -0.8 2,938,881 + CA264_12590 0.46 +1.7 2,938,882 - CA264_12590 0.46 +0.6 2,938,964 - CA264_12590 0.53 +1.0 2,938,992 + CA264_12590 0.55 -1.4 2,938,997 - CA264_12590 0.55 +0.4 2,939,107 + CA264_12590 0.64 -0.1 2,939,107 + CA264_12590 0.64 +0.6 2,939,107 + CA264_12590 0.64 -0.5 2,939,107 + CA264_12590 0.64 +0.3 2,939,108 - CA264_12590 0.64 +0.5 2,939,108 - CA264_12590 0.64 +0.3
Or see this region's nucleotide sequence