Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12315

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12305 and CA264_12310 are separated by 5 nucleotidesCA264_12310 and CA264_12315 are separated by 204 nucleotidesCA264_12315 and CA264_12320 are separated by 41 nucleotides CA264_12305: CA264_12305 - MRP family ATP-binding protein, at 2,867,485 to 2,868,588 _12305 CA264_12310: CA264_12310 - NifU family protein, at 2,868,594 to 2,868,863 _12310 CA264_12315: CA264_12315 - fumarylacetoacetase, at 2,869,068 to 2,870,339 _12315 CA264_12320: CA264_12320 - flavin reductase, at 2,870,381 to 2,871,286 _12320 Position (kb) 2869 2870 2871Strain fitness (log2 ratio) -2 -1 0 1 2at 2868.579 kb on + strandat 2868.592 kb on - strandat 2868.704 kb on - strand, within CA264_12310at 2868.704 kb on - strand, within CA264_12310at 2868.878 kb on + strandat 2868.879 kb on - strandat 2868.883 kb on + strandat 2868.884 kb on - strandat 2868.884 kb on - strandat 2868.899 kb on + strandat 2868.928 kb on + strandat 2869.012 kb on - strandat 2869.041 kb on + strandat 2869.042 kb on - strandat 2869.072 kb on + strandat 2869.072 kb on + strandat 2869.111 kb on + strandat 2869.111 kb on + strandat 2869.111 kb on + strandat 2869.206 kb on + strand, within CA264_12315at 2869.207 kb on - strand, within CA264_12315at 2869.207 kb on - strand, within CA264_12315at 2869.255 kb on + strand, within CA264_12315at 2869.448 kb on - strand, within CA264_12315at 2869.524 kb on - strand, within CA264_12315at 2869.567 kb on - strand, within CA264_12315at 2869.609 kb on + strand, within CA264_12315at 2869.610 kb on - strand, within CA264_12315at 2869.763 kb on + strand, within CA264_12315at 2869.822 kb on - strand, within CA264_12315at 2869.913 kb on - strand, within CA264_12315at 2869.948 kb on - strand, within CA264_12315at 2869.969 kb on - strand, within CA264_12315at 2869.975 kb on - strand, within CA264_12315at 2870.044 kb on - strand, within CA264_12315at 2870.052 kb on - strand, within CA264_12315at 2870.124 kb on + strand, within CA264_12315at 2870.124 kb on + strand, within CA264_12315at 2870.183 kb on + strand, within CA264_12315at 2870.338 kb on - strandat 2870.369 kb on + strandat 2870.436 kb on + strandat 2870.436 kb on + strandat 2870.528 kb on - strand, within CA264_12320at 2870.686 kb on + strand, within CA264_12320at 2870.687 kb on - strand, within CA264_12320at 2870.687 kb on - strand, within CA264_12320at 2870.693 kb on + strand, within CA264_12320at 2870.693 kb on + strand, within CA264_12320at 2870.717 kb on - strand, within CA264_12320at 2870.918 kb on + strand, within CA264_12320at 2871.018 kb on + strand, within CA264_12320at 2871.155 kb on + strand, within CA264_12320at 2871.156 kb on - strand, within CA264_12320at 2871.171 kb on - strand, within CA264_12320at 2871.171 kb on - strand, within CA264_12320at 2871.171 kb on - strand, within CA264_12320at 2871.285 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,868,579 + -0.8
2,868,592 - -1.5
2,868,704 - CA264_12310 0.41 -2.2
2,868,704 - CA264_12310 0.41 -1.6
2,868,878 + -2.0
2,868,879 - -2.0
2,868,883 + -1.9
2,868,884 - -1.8
2,868,884 - -0.9
2,868,899 + -0.5
2,868,928 + -0.3
2,869,012 - -1.3
2,869,041 + -0.1
2,869,042 - -0.2
2,869,072 + -1.8
2,869,072 + -1.4
2,869,111 + -0.4
2,869,111 + +0.0
2,869,111 + -0.9
2,869,206 + CA264_12315 0.11 -0.0
2,869,207 - CA264_12315 0.11 -0.8
2,869,207 - CA264_12315 0.11 -0.1
2,869,255 + CA264_12315 0.15 -1.7
2,869,448 - CA264_12315 0.30 -0.7
2,869,524 - CA264_12315 0.36 +0.0
2,869,567 - CA264_12315 0.39 -0.4
2,869,609 + CA264_12315 0.43 -0.1
2,869,610 - CA264_12315 0.43 -0.8
2,869,763 + CA264_12315 0.55 -1.0
2,869,822 - CA264_12315 0.59 -0.9
2,869,913 - CA264_12315 0.66 -0.8
2,869,948 - CA264_12315 0.69 -0.1
2,869,969 - CA264_12315 0.71 -2.4
2,869,975 - CA264_12315 0.71 -0.8
2,870,044 - CA264_12315 0.77 +0.1
2,870,052 - CA264_12315 0.77 -0.2
2,870,124 + CA264_12315 0.83 +0.7
2,870,124 + CA264_12315 0.83 +0.6
2,870,183 + CA264_12315 0.88 +1.0
2,870,338 - -0.5
2,870,369 + +0.4
2,870,436 + -0.1
2,870,436 + -1.3
2,870,528 - CA264_12320 0.16 -0.5
2,870,686 + CA264_12320 0.34 -0.7
2,870,687 - CA264_12320 0.34 -0.7
2,870,687 - CA264_12320 0.34 +2.4
2,870,693 + CA264_12320 0.34 +0.1
2,870,693 + CA264_12320 0.34 +0.2
2,870,717 - CA264_12320 0.37 -0.3
2,870,918 + CA264_12320 0.59 -0.1
2,871,018 + CA264_12320 0.70 -0.5
2,871,155 + CA264_12320 0.85 +0.2
2,871,156 - CA264_12320 0.86 -1.9
2,871,171 - CA264_12320 0.87 -0.9
2,871,171 - CA264_12320 0.87 -0.2
2,871,171 - CA264_12320 0.87 -0.6
2,871,285 - -0.6

Or see this region's nucleotide sequence