Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12300

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12290 and CA264_12295 are separated by 173 nucleotidesCA264_12295 and CA264_12300 are separated by 197 nucleotidesCA264_12300 and CA264_12305 are separated by 157 nucleotides CA264_12290: CA264_12290 - hypothetical protein, at 2,865,374 to 2,865,997 _12290 CA264_12295: CA264_12295 - transcriptional regulator, at 2,866,171 to 2,866,596 _12295 CA264_12300: CA264_12300 - RNase III inhibitor, at 2,866,794 to 2,867,327 _12300 CA264_12305: CA264_12305 - MRP family ATP-binding protein, at 2,867,485 to 2,868,588 _12305 Position (kb) 2866 2867 2868Strain fitness (log2 ratio) -2 -1 0 1 2at 2865.799 kb on + strand, within CA264_12290at 2866.066 kb on + strandat 2866.103 kb on + strandat 2866.104 kb on - strandat 2866.109 kb on + strandat 2866.109 kb on + strandat 2866.109 kb on + strandat 2866.109 kb on + strandat 2866.115 kb on + strandat 2866.121 kb on + strandat 2866.143 kb on - strandat 2866.149 kb on - strandat 2866.169 kb on + strandat 2866.170 kb on - strandat 2866.191 kb on + strandat 2866.192 kb on - strandat 2866.192 kb on - strandat 2866.279 kb on - strand, within CA264_12295at 2866.359 kb on + strand, within CA264_12295at 2866.476 kb on + strand, within CA264_12295at 2866.489 kb on - strand, within CA264_12295at 2866.489 kb on - strand, within CA264_12295at 2866.523 kb on - strand, within CA264_12295at 2866.567 kb on + strandat 2866.567 kb on + strandat 2866.568 kb on - strandat 2866.568 kb on - strandat 2866.601 kb on - strandat 2866.601 kb on - strandat 2866.605 kb on + strandat 2866.606 kb on - strandat 2866.607 kb on + strandat 2866.747 kb on - strandat 2866.748 kb on + strandat 2866.749 kb on - strandat 2866.749 kb on - strandat 2866.749 kb on - strandat 2866.749 kb on - strandat 2866.753 kb on + strandat 2866.753 kb on + strandat 2866.753 kb on + strandat 2866.753 kb on + strandat 2866.753 kb on + strandat 2866.763 kb on - strandat 2866.871 kb on + strand, within CA264_12300at 2866.872 kb on - strand, within CA264_12300at 2866.948 kb on + strand, within CA264_12300at 2866.977 kb on + strand, within CA264_12300at 2866.978 kb on - strand, within CA264_12300at 2867.212 kb on - strand, within CA264_12300at 2867.289 kb on + strandat 2867.289 kb on + strandat 2867.291 kb on + strandat 2867.310 kb on + strandat 2867.310 kb on + strandat 2867.312 kb on + strandat 2867.313 kb on - strandat 2867.313 kb on - strandat 2867.321 kb on + strandat 2867.380 kb on + strandat 2867.385 kb on - strandat 2867.385 kb on - strandat 2867.419 kb on + strandat 2867.419 kb on + strandat 2867.419 kb on + strandat 2867.420 kb on - strandat 2867.420 kb on - strandat 2867.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,865,799 + CA264_12290 0.68 -0.1
2,866,066 + -1.9
2,866,103 + +0.1
2,866,104 - +1.2
2,866,109 + -0.1
2,866,109 + -0.1
2,866,109 + -0.3
2,866,109 + -2.2
2,866,115 + +0.3
2,866,121 + -0.2
2,866,143 - -0.1
2,866,149 - -0.1
2,866,169 + +1.0
2,866,170 - +1.0
2,866,191 + +0.0
2,866,192 - -2.3
2,866,192 - -1.8
2,866,279 - CA264_12295 0.25 -0.1
2,866,359 + CA264_12295 0.44 +0.5
2,866,476 + CA264_12295 0.72 +0.2
2,866,489 - CA264_12295 0.75 -1.0
2,866,489 - CA264_12295 0.75 +0.7
2,866,523 - CA264_12295 0.83 -0.2
2,866,567 + +0.0
2,866,567 + +1.8
2,866,568 - -0.2
2,866,568 - -0.1
2,866,601 - -1.0
2,866,601 - -0.4
2,866,605 + +0.1
2,866,606 - -0.8
2,866,607 + -0.1
2,866,747 - +0.5
2,866,748 + +1.3
2,866,749 - +1.2
2,866,749 - -0.8
2,866,749 - +0.1
2,866,749 - +1.0
2,866,753 + +0.8
2,866,753 + +0.9
2,866,753 + +0.5
2,866,753 + +0.4
2,866,753 + -0.5
2,866,763 - +0.5
2,866,871 + CA264_12300 0.14 +1.6
2,866,872 - CA264_12300 0.15 +1.3
2,866,948 + CA264_12300 0.29 +0.1
2,866,977 + CA264_12300 0.34 +1.6
2,866,978 - CA264_12300 0.34 +1.7
2,867,212 - CA264_12300 0.78 +0.7
2,867,289 + +0.5
2,867,289 + +0.1
2,867,291 + +0.9
2,867,310 + +0.5
2,867,310 + +1.0
2,867,312 + +0.7
2,867,313 - +0.2
2,867,313 - +0.4
2,867,321 + +0.8
2,867,380 + -0.5
2,867,385 - +0.2
2,867,385 - +0.9
2,867,419 + +1.4
2,867,419 + +0.2
2,867,419 + +1.5
2,867,420 - -0.5
2,867,420 - +0.2
2,867,444 - -0.8

Or see this region's nucleotide sequence