Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11945

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_11940 and CA264_11945 are separated by 96 nucleotidesCA264_11945 and CA264_11950 are separated by 163 nucleotides CA264_11940: CA264_11940 - peptidase M23, at 2,774,975 to 2,776,774 _11940 CA264_11945: CA264_11945 - peroxiredoxin, at 2,776,871 to 2,777,320 _11945 CA264_11950: CA264_11950 - transketolase, at 2,777,484 to 2,778,341 _11950 Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -2 -1 0 1 2at 2775.877 kb on - strand, within CA264_11940at 2775.877 kb on - strand, within CA264_11940at 2775.877 kb on - strand, within CA264_11940at 2775.877 kb on - strand, within CA264_11940at 2776.068 kb on - strand, within CA264_11940at 2776.105 kb on + strand, within CA264_11940at 2776.105 kb on + strand, within CA264_11940at 2776.134 kb on - strand, within CA264_11940at 2776.192 kb on + strand, within CA264_11940at 2776.192 kb on + strand, within CA264_11940at 2776.193 kb on - strand, within CA264_11940at 2776.319 kb on + strand, within CA264_11940at 2776.319 kb on + strand, within CA264_11940at 2776.340 kb on - strand, within CA264_11940at 2776.416 kb on - strand, within CA264_11940at 2776.416 kb on - strand, within CA264_11940at 2776.416 kb on - strand, within CA264_11940at 2776.446 kb on - strand, within CA264_11940at 2776.535 kb on + strand, within CA264_11940at 2776.581 kb on + strand, within CA264_11940at 2776.581 kb on + strand, within CA264_11940at 2776.582 kb on - strand, within CA264_11940at 2776.649 kb on + strandat 2776.650 kb on - strandat 2776.650 kb on - strandat 2776.650 kb on - strandat 2776.716 kb on + strandat 2776.717 kb on - strandat 2776.728 kb on + strandat 2776.757 kb on + strandat 2776.758 kb on - strandat 2776.758 kb on - strandat 2776.758 kb on - strandat 2776.760 kb on - strandat 2776.770 kb on + strandat 2776.770 kb on + strandat 2776.770 kb on + strandat 2776.772 kb on + strandat 2776.773 kb on - strandat 2776.871 kb on - strandat 2776.871 kb on - strandat 2776.936 kb on - strand, within CA264_11945at 2776.974 kb on - strand, within CA264_11945at 2776.974 kb on - strand, within CA264_11945at 2776.974 kb on - strand, within CA264_11945at 2776.980 kb on - strand, within CA264_11945at 2777.036 kb on + strand, within CA264_11945at 2777.036 kb on + strand, within CA264_11945at 2777.036 kb on + strand, within CA264_11945at 2777.037 kb on - strand, within CA264_11945at 2777.060 kb on + strand, within CA264_11945at 2777.068 kb on - strand, within CA264_11945at 2777.068 kb on - strand, within CA264_11945at 2777.213 kb on + strand, within CA264_11945at 2777.214 kb on - strand, within CA264_11945at 2777.276 kb on - strandat 2777.377 kb on + strandat 2777.398 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.430 kb on + strandat 2777.477 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
2,775,877 - CA264_11940 0.50 +1.6
2,775,877 - CA264_11940 0.50 +2.2
2,775,877 - CA264_11940 0.50 -0.5
2,775,877 - CA264_11940 0.50 +0.0
2,776,068 - CA264_11940 0.61 +1.1
2,776,105 + CA264_11940 0.63 -1.2
2,776,105 + CA264_11940 0.63 +0.3
2,776,134 - CA264_11940 0.64 -0.7
2,776,192 + CA264_11940 0.68 +0.6
2,776,192 + CA264_11940 0.68 +1.6
2,776,193 - CA264_11940 0.68 +0.4
2,776,319 + CA264_11940 0.75 +1.7
2,776,319 + CA264_11940 0.75 +0.5
2,776,340 - CA264_11940 0.76 +0.1
2,776,416 - CA264_11940 0.80 -0.8
2,776,416 - CA264_11940 0.80 +0.1
2,776,416 - CA264_11940 0.80 -0.3
2,776,446 - CA264_11940 0.82 +0.1
2,776,535 + CA264_11940 0.87 -2.0
2,776,581 + CA264_11940 0.89 +1.1
2,776,581 + CA264_11940 0.89 -0.3
2,776,582 - CA264_11940 0.89 -0.5
2,776,649 + +0.8
2,776,650 - +0.4
2,776,650 - -0.8
2,776,650 - -1.0
2,776,716 + +0.3
2,776,717 - +0.6
2,776,728 + +0.1
2,776,757 + -0.5
2,776,758 - +0.5
2,776,758 - -0.1
2,776,758 - -1.0
2,776,760 - +0.2
2,776,770 + -0.3
2,776,770 + -0.3
2,776,770 + -0.6
2,776,772 + +0.4
2,776,773 - +0.4
2,776,871 - +0.2
2,776,871 - +0.2
2,776,936 - CA264_11945 0.14 -2.0
2,776,974 - CA264_11945 0.23 -2.2
2,776,974 - CA264_11945 0.23 -0.8
2,776,974 - CA264_11945 0.23 -1.4
2,776,980 - CA264_11945 0.24 -1.5
2,777,036 + CA264_11945 0.37 -1.2
2,777,036 + CA264_11945 0.37 -1.3
2,777,036 + CA264_11945 0.37 +1.2
2,777,037 - CA264_11945 0.37 -0.6
2,777,060 + CA264_11945 0.42 -1.4
2,777,068 - CA264_11945 0.44 +0.4
2,777,068 - CA264_11945 0.44 -0.8
2,777,213 + CA264_11945 0.76 -1.3
2,777,214 - CA264_11945 0.76 -0.8
2,777,276 - +0.4
2,777,377 + +0.1
2,777,398 + -0.1
2,777,430 + +0.4
2,777,430 + -1.0
2,777,430 + +0.8
2,777,430 + +0.7
2,777,477 - +0.8

Or see this region's nucleotide sequence