Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10925

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10920 and CA264_10925 overlap by 20 nucleotidesCA264_10925 and CA264_10930 are separated by 50 nucleotides CA264_10920: CA264_10920 - helix-turn-helix-type transcriptional regulator, at 2,521,401 to 2,522,276 _10920 CA264_10925: CA264_10925 - fatty acid hydroxylase, at 2,522,257 to 2,522,748 _10925 CA264_10930: CA264_10930 - methylglutaconyl-CoA hydratase, at 2,522,799 to 2,523,608 _10930 Position (kb) 2522 2523Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2521.407 kb on - strandat 2521.492 kb on + strand, within CA264_10920at 2521.493 kb on - strand, within CA264_10920at 2521.493 kb on - strand, within CA264_10920at 2521.498 kb on + strand, within CA264_10920at 2521.499 kb on - strand, within CA264_10920at 2521.499 kb on - strand, within CA264_10920at 2521.502 kb on + strand, within CA264_10920at 2521.502 kb on + strand, within CA264_10920at 2521.503 kb on - strand, within CA264_10920at 2521.540 kb on + strand, within CA264_10920at 2521.590 kb on - strand, within CA264_10920at 2521.590 kb on - strand, within CA264_10920at 2521.687 kb on + strand, within CA264_10920at 2521.687 kb on + strand, within CA264_10920at 2521.688 kb on - strand, within CA264_10920at 2521.688 kb on - strand, within CA264_10920at 2521.688 kb on - strand, within CA264_10920at 2521.736 kb on - strand, within CA264_10920at 2521.744 kb on + strand, within CA264_10920at 2521.745 kb on - strand, within CA264_10920at 2521.822 kb on - strand, within CA264_10920at 2521.844 kb on + strand, within CA264_10920at 2522.034 kb on + strand, within CA264_10920at 2522.085 kb on - strand, within CA264_10920at 2522.096 kb on - strand, within CA264_10920at 2522.120 kb on + strand, within CA264_10920at 2522.120 kb on + strand, within CA264_10920at 2522.121 kb on - strand, within CA264_10920at 2522.155 kb on + strand, within CA264_10920at 2522.192 kb on + strandat 2522.193 kb on - strandat 2522.222 kb on + strandat 2522.242 kb on - strandat 2522.258 kb on + strandat 2522.259 kb on - strandat 2522.261 kb on + strandat 2522.266 kb on + strandat 2522.266 kb on + strandat 2522.266 kb on + strandat 2522.305 kb on - strandat 2522.309 kb on + strand, within CA264_10925at 2522.427 kb on + strand, within CA264_10925at 2522.461 kb on + strand, within CA264_10925at 2522.499 kb on - strand, within CA264_10925at 2522.537 kb on - strand, within CA264_10925at 2522.583 kb on - strand, within CA264_10925at 2522.586 kb on - strand, within CA264_10925at 2522.748 kb on + strandat 2522.749 kb on - strandat 2522.752 kb on + strandat 2522.819 kb on + strandat 2522.820 kb on - strandat 2523.154 kb on - strand, within CA264_10930at 2523.154 kb on - strand, within CA264_10930at 2523.290 kb on + strand, within CA264_10930at 2523.290 kb on + strand, within CA264_10930at 2523.293 kb on - strand, within CA264_10930at 2523.532 kb on + strandat 2523.533 kb on - strandat 2523.580 kb on - strandat 2523.580 kb on - strandat 2523.612 kb on + strandat 2523.627 kb on - strandat 2523.658 kb on - strandat 2523.666 kb on - strandat 2523.667 kb on + strandat 2523.668 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,521,407 - +0.2
2,521,492 + CA264_10920 0.10 +1.5
2,521,493 - CA264_10920 0.11 +1.3
2,521,493 - CA264_10920 0.11 +0.7
2,521,498 + CA264_10920 0.11 +1.1
2,521,499 - CA264_10920 0.11 +0.3
2,521,499 - CA264_10920 0.11 +0.6
2,521,502 + CA264_10920 0.12 +1.2
2,521,502 + CA264_10920 0.12 -0.7
2,521,503 - CA264_10920 0.12 +0.9
2,521,540 + CA264_10920 0.16 +0.7
2,521,590 - CA264_10920 0.22 +1.8
2,521,590 - CA264_10920 0.22 +0.8
2,521,687 + CA264_10920 0.33 +1.1
2,521,687 + CA264_10920 0.33 +0.7
2,521,688 - CA264_10920 0.33 +1.5
2,521,688 - CA264_10920 0.33 +1.6
2,521,688 - CA264_10920 0.33 +0.9
2,521,736 - CA264_10920 0.38 +1.5
2,521,744 + CA264_10920 0.39 +0.5
2,521,745 - CA264_10920 0.39 +1.6
2,521,822 - CA264_10920 0.48 +0.5
2,521,844 + CA264_10920 0.51 +0.3
2,522,034 + CA264_10920 0.72 +0.9
2,522,085 - CA264_10920 0.78 +1.1
2,522,096 - CA264_10920 0.79 -0.3
2,522,120 + CA264_10920 0.82 +1.0
2,522,120 + CA264_10920 0.82 +0.8
2,522,121 - CA264_10920 0.82 +1.2
2,522,155 + CA264_10920 0.86 +1.4
2,522,192 + +0.7
2,522,193 - +1.3
2,522,222 + +0.9
2,522,242 - +1.1
2,522,258 + +1.0
2,522,259 - -0.0
2,522,261 + +1.0
2,522,266 + +0.4
2,522,266 + +0.8
2,522,266 + -0.8
2,522,305 - -1.0
2,522,309 + CA264_10925 0.11 -1.2
2,522,427 + CA264_10925 0.35 -1.0
2,522,461 + CA264_10925 0.41 -1.3
2,522,499 - CA264_10925 0.49 -0.8
2,522,537 - CA264_10925 0.57 -1.3
2,522,583 - CA264_10925 0.66 -0.3
2,522,586 - CA264_10925 0.67 -1.5
2,522,748 + -1.0
2,522,749 - -0.8
2,522,752 + -1.7
2,522,819 + -1.5
2,522,820 - -1.1
2,523,154 - CA264_10930 0.44 -1.5
2,523,154 - CA264_10930 0.44 -1.0
2,523,290 + CA264_10930 0.61 -1.4
2,523,290 + CA264_10930 0.61 -0.7
2,523,293 - CA264_10930 0.61 +0.1
2,523,532 + -1.7
2,523,533 - -1.3
2,523,580 - -1.2
2,523,580 - -1.6
2,523,612 + -2.5
2,523,627 - -0.6
2,523,658 - -1.5
2,523,666 - -0.7
2,523,667 + -2.9
2,523,668 - -1.8

Or see this region's nucleotide sequence