Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10165 and CA264_10170 are separated by 30 nucleotides
CA264_10165: CA264_10165 - T9SS C-terminal target domain-containing protein, at 2,361,003 to 2,363,897
_10165
CA264_10170: CA264_10170 - endonuclease, at 2,363,928 to 2,365,268
_10170
Position (kb)
2361
2362
2363
2364 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2360.032 kb on - strand at 2360.141 kb on - strand at 2360.141 kb on - strand at 2360.184 kb on - strand at 2360.197 kb on - strand at 2360.218 kb on - strand at 2360.249 kb on + strand at 2360.250 kb on - strand at 2360.280 kb on - strand at 2360.289 kb on - strand at 2360.346 kb on + strand at 2360.347 kb on - strand at 2360.370 kb on + strand at 2360.373 kb on + strand at 2360.374 kb on - strand at 2360.374 kb on - strand at 2360.378 kb on - strand at 2360.400 kb on - strand at 2360.432 kb on + strand at 2360.432 kb on + strand at 2360.464 kb on + strand at 2360.464 kb on + strand at 2360.468 kb on + strand at 2360.526 kb on + strand at 2360.532 kb on + strand at 2360.536 kb on + strand at 2360.537 kb on - strand at 2360.537 kb on - strand at 2360.538 kb on + strand at 2360.538 kb on + strand at 2360.539 kb on - strand at 2360.550 kb on + strand at 2360.551 kb on - strand at 2360.551 kb on - strand at 2360.586 kb on - strand at 2360.604 kb on + strand at 2360.617 kb on + strand at 2360.618 kb on - strand at 2360.632 kb on - strand at 2360.720 kb on - strand at 2360.720 kb on - strand at 2360.720 kb on - strand at 2360.742 kb on + strand at 2360.743 kb on - strand at 2360.754 kb on - strand at 2360.758 kb on - strand at 2360.758 kb on - strand at 2360.764 kb on - strand at 2360.764 kb on - strand at 2360.764 kb on - strand at 2360.866 kb on - strand at 2361.005 kb on - strand at 2361.061 kb on + strand at 2361.365 kb on - strand, within CA264_10165 at 2361.406 kb on + strand, within CA264_10165 at 2361.406 kb on + strand, within CA264_10165 at 2361.415 kb on + strand, within CA264_10165 at 2361.416 kb on - strand, within CA264_10165 at 2361.419 kb on + strand, within CA264_10165 at 2361.419 kb on + strand, within CA264_10165 at 2361.420 kb on - strand, within CA264_10165 at 2361.520 kb on + strand, within CA264_10165 at 2361.673 kb on + strand, within CA264_10165 at 2361.673 kb on + strand, within CA264_10165 at 2361.709 kb on + strand, within CA264_10165 at 2361.710 kb on - strand, within CA264_10165 at 2361.760 kb on + strand, within CA264_10165 at 2361.761 kb on - strand, within CA264_10165 at 2361.761 kb on - strand, within CA264_10165 at 2361.761 kb on - strand, within CA264_10165 at 2361.761 kb on - strand, within CA264_10165 at 2361.761 kb on - strand, within CA264_10165 at 2361.761 kb on - strand, within CA264_10165 at 2361.846 kb on - strand, within CA264_10165 at 2361.846 kb on - strand, within CA264_10165 at 2361.926 kb on + strand, within CA264_10165 at 2361.928 kb on + strand, within CA264_10165 at 2361.929 kb on - strand, within CA264_10165 at 2362.208 kb on - strand, within CA264_10165 at 2362.458 kb on + strand, within CA264_10165 at 2362.458 kb on + strand, within CA264_10165 at 2362.459 kb on - strand, within CA264_10165 at 2362.570 kb on + strand, within CA264_10165 at 2362.605 kb on + strand, within CA264_10165 at 2362.609 kb on + strand, within CA264_10165 at 2362.612 kb on + strand, within CA264_10165 at 2362.612 kb on + strand, within CA264_10165 at 2362.612 kb on + strand, within CA264_10165 at 2362.612 kb on + strand, within CA264_10165 at 2362.612 kb on + strand, within CA264_10165 at 2362.613 kb on - strand, within CA264_10165 at 2362.613 kb on - strand, within CA264_10165 at 2362.794 kb on + strand, within CA264_10165 at 2362.795 kb on - strand, within CA264_10165 at 2362.912 kb on + strand, within CA264_10165 at 2362.913 kb on - strand, within CA264_10165 at 2362.913 kb on - strand, within CA264_10165 at 2362.988 kb on + strand, within CA264_10165 at 2363.055 kb on - strand, within CA264_10165 at 2363.087 kb on + strand, within CA264_10165 at 2363.116 kb on - strand, within CA264_10165 at 2363.872 kb on + strand at 2363.872 kb on + strand at 2363.924 kb on - strand at 2363.929 kb on + strand at 2363.929 kb on + strand at 2363.998 kb on - strand at 2364.244 kb on + strand, within CA264_10170 at 2364.244 kb on + strand, within CA264_10170 at 2364.263 kb on - strand, within CA264_10170 at 2364.287 kb on - strand, within CA264_10170 at 2364.299 kb on - strand, within CA264_10170 at 2364.299 kb on - strand, within CA264_10170 at 2364.598 kb on + strand, within CA264_10170 at 2364.623 kb on + strand, within CA264_10170 at 2364.636 kb on + strand, within CA264_10170 at 2364.656 kb on + strand, within CA264_10170 at 2364.657 kb on - strand, within CA264_10170 at 2364.712 kb on + strand, within CA264_10170 at 2364.768 kb on - strand, within CA264_10170 at 2364.862 kb on + strand, within CA264_10170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,360,032 - +0.5 2,360,141 - +0.6 2,360,141 - +0.3 2,360,184 - -0.2 2,360,197 - -0.2 2,360,218 - -0.2 2,360,249 + -0.5 2,360,250 - -1.3 2,360,280 - -0.1 2,360,289 - +0.3 2,360,346 + -1.0 2,360,347 - -0.1 2,360,370 + -0.0 2,360,373 + +0.6 2,360,374 - +0.0 2,360,374 - -0.5 2,360,378 - +0.5 2,360,400 - +0.6 2,360,432 + -0.5 2,360,432 + +0.4 2,360,464 + -1.9 2,360,464 + -0.6 2,360,468 + +0.4 2,360,526 + +0.8 2,360,532 + +0.8 2,360,536 + +0.8 2,360,537 - +0.0 2,360,537 - -0.3 2,360,538 + +0.1 2,360,538 + -0.5 2,360,539 - +1.2 2,360,550 + -0.4 2,360,551 - -0.3 2,360,551 - +0.3 2,360,586 - +1.0 2,360,604 + -0.5 2,360,617 + +0.8 2,360,618 - -0.5 2,360,632 - +0.6 2,360,720 - +0.1 2,360,720 - -1.1 2,360,720 - +0.1 2,360,742 + -0.2 2,360,743 - -0.4 2,360,754 - -0.4 2,360,758 - -0.1 2,360,758 - +0.4 2,360,764 - -0.6 2,360,764 - -0.1 2,360,764 - -0.1 2,360,866 - +1.1 2,361,005 - -0.3 2,361,061 + -1.1 2,361,365 - CA264_10165 0.13 -1.0 2,361,406 + CA264_10165 0.14 -0.7 2,361,406 + CA264_10165 0.14 -0.2 2,361,415 + CA264_10165 0.14 -1.5 2,361,416 - CA264_10165 0.14 -0.4 2,361,419 + CA264_10165 0.14 -1.2 2,361,419 + CA264_10165 0.14 -0.3 2,361,420 - CA264_10165 0.14 -0.5 2,361,520 + CA264_10165 0.18 -0.3 2,361,673 + CA264_10165 0.23 -0.8 2,361,673 + CA264_10165 0.23 -0.4 2,361,709 + CA264_10165 0.24 +0.1 2,361,710 - CA264_10165 0.24 -0.7 2,361,760 + CA264_10165 0.26 -1.6 2,361,761 - CA264_10165 0.26 +0.4 2,361,761 - CA264_10165 0.26 +0.1 2,361,761 - CA264_10165 0.26 +0.3 2,361,761 - CA264_10165 0.26 +3.0 2,361,761 - CA264_10165 0.26 -0.3 2,361,761 - CA264_10165 0.26 -1.5 2,361,846 - CA264_10165 0.29 -1.5 2,361,846 - CA264_10165 0.29 -0.4 2,361,926 + CA264_10165 0.32 +2.2 2,361,928 + CA264_10165 0.32 -0.1 2,361,929 - CA264_10165 0.32 -0.8 2,362,208 - CA264_10165 0.42 -0.6 2,362,458 + CA264_10165 0.50 +1.3 2,362,458 + CA264_10165 0.50 -2.8 2,362,459 - CA264_10165 0.50 -0.4 2,362,570 + CA264_10165 0.54 -0.0 2,362,605 + CA264_10165 0.55 +0.5 2,362,609 + CA264_10165 0.55 -0.0 2,362,612 + CA264_10165 0.56 -0.3 2,362,612 + CA264_10165 0.56 -0.1 2,362,612 + CA264_10165 0.56 -2.1 2,362,612 + CA264_10165 0.56 +0.6 2,362,612 + CA264_10165 0.56 +0.5 2,362,613 - CA264_10165 0.56 -0.9 2,362,613 - CA264_10165 0.56 +0.4 2,362,794 + CA264_10165 0.62 +1.2 2,362,795 - CA264_10165 0.62 -0.1 2,362,912 + CA264_10165 0.66 -0.0 2,362,913 - CA264_10165 0.66 +0.1 2,362,913 - CA264_10165 0.66 -0.8 2,362,988 + CA264_10165 0.69 -0.2 2,363,055 - CA264_10165 0.71 -0.0 2,363,087 + CA264_10165 0.72 -0.4 2,363,116 - CA264_10165 0.73 -0.4 2,363,872 + +1.2 2,363,872 + -0.2 2,363,924 - +0.3 2,363,929 + +0.2 2,363,929 + -0.7 2,363,998 - +0.9 2,364,244 + CA264_10170 0.24 +1.7 2,364,244 + CA264_10170 0.24 -1.5 2,364,263 - CA264_10170 0.25 +0.0 2,364,287 - CA264_10170 0.27 -1.5 2,364,299 - CA264_10170 0.28 +0.4 2,364,299 - CA264_10170 0.28 -0.5 2,364,598 + CA264_10170 0.50 +1.1 2,364,623 + CA264_10170 0.52 -1.2 2,364,636 + CA264_10170 0.53 -0.9 2,364,656 + CA264_10170 0.54 +0.5 2,364,657 - CA264_10170 0.54 +0.4 2,364,712 + CA264_10170 0.58 -0.9 2,364,768 - CA264_10170 0.63 -0.8 2,364,862 + CA264_10170 0.70 +0.4
Or see this region's nucleotide sequence