Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09800

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09795 and CA264_09800 are separated by 539 nucleotidesCA264_09800 and CA264_09805 are separated by 467 nucleotides CA264_09795: CA264_09795 - hypothetical protein, at 2,273,736 to 2,276,834 _09795 CA264_09800: CA264_09800 - DNA-binding response regulator, at 2,277,374 to 2,278,096 _09800 CA264_09805: CA264_09805 - hypothetical protein, at 2,278,564 to 2,279,295 _09805 Position (kb) 2277 2278 2279Strain fitness (log2 ratio) -2 -1 0 1 2at 2276.374 kb on + strand, within CA264_09795at 2276.396 kb on - strand, within CA264_09795at 2276.396 kb on - strand, within CA264_09795at 2276.413 kb on - strand, within CA264_09795at 2276.418 kb on + strand, within CA264_09795at 2276.418 kb on + strand, within CA264_09795at 2276.418 kb on + strand, within CA264_09795at 2276.418 kb on + strand, within CA264_09795at 2276.419 kb on - strand, within CA264_09795at 2276.419 kb on - strand, within CA264_09795at 2276.419 kb on - strand, within CA264_09795at 2276.448 kb on - strand, within CA264_09795at 2276.492 kb on - strand, within CA264_09795at 2276.574 kb on - strandat 2276.711 kb on + strandat 2276.712 kb on - strandat 2276.771 kb on + strandat 2276.772 kb on - strandat 2276.774 kb on + strandat 2276.774 kb on + strandat 2276.775 kb on - strandat 2276.775 kb on - strandat 2276.775 kb on - strandat 2276.775 kb on - strandat 2276.795 kb on + strandat 2276.838 kb on - strandat 2276.838 kb on - strandat 2276.841 kb on + strandat 2276.841 kb on + strandat 2276.841 kb on + strandat 2276.842 kb on - strandat 2276.842 kb on - strandat 2276.842 kb on - strandat 2276.844 kb on - strandat 2276.844 kb on - strandat 2276.847 kb on + strandat 2276.848 kb on - strandat 2276.848 kb on - strandat 2276.867 kb on + strandat 2276.868 kb on - strandat 2276.871 kb on + strandat 2276.899 kb on + strandat 2276.973 kb on - strandat 2277.150 kb on + strandat 2277.151 kb on - strandat 2277.239 kb on - strandat 2277.239 kb on - strandat 2277.241 kb on + strandat 2277.241 kb on + strandat 2277.242 kb on - strandat 2277.244 kb on + strandat 2277.245 kb on - strandat 2277.249 kb on + strandat 2277.250 kb on - strandat 2277.295 kb on + strandat 2277.307 kb on + strandat 2277.329 kb on + strandat 2277.329 kb on + strandat 2277.375 kb on + strandat 2277.417 kb on + strandat 2277.422 kb on - strandat 2277.527 kb on - strand, within CA264_09800at 2277.574 kb on - strand, within CA264_09800at 2277.574 kb on - strand, within CA264_09800at 2277.601 kb on - strand, within CA264_09800at 2277.612 kb on + strand, within CA264_09800at 2277.697 kb on + strand, within CA264_09800at 2277.797 kb on - strand, within CA264_09800at 2277.810 kb on + strand, within CA264_09800at 2277.884 kb on + strand, within CA264_09800at 2277.896 kb on + strand, within CA264_09800at 2277.903 kb on - strand, within CA264_09800at 2277.935 kb on + strand, within CA264_09800at 2277.936 kb on - strand, within CA264_09800at 2277.936 kb on - strand, within CA264_09800at 2277.936 kb on - strand, within CA264_09800at 2277.944 kb on - strand, within CA264_09800at 2277.944 kb on - strand, within CA264_09800at 2277.947 kb on + strand, within CA264_09800at 2277.948 kb on - strand, within CA264_09800at 2277.948 kb on - strand, within CA264_09800at 2277.950 kb on + strand, within CA264_09800at 2277.951 kb on - strand, within CA264_09800at 2277.951 kb on - strand, within CA264_09800at 2278.013 kb on + strand, within CA264_09800at 2278.033 kb on + strandat 2278.085 kb on - strandat 2278.132 kb on - strandat 2278.176 kb on + strandat 2278.177 kb on - strandat 2278.177 kb on - strandat 2278.194 kb on - strandat 2278.194 kb on - strandat 2278.255 kb on + strandat 2278.289 kb on + strandat 2278.482 kb on + strandat 2278.566 kb on - strandat 2278.573 kb on + strandat 2278.576 kb on - strandat 2278.576 kb on - strandat 2278.648 kb on + strand, within CA264_09805at 2278.648 kb on + strand, within CA264_09805at 2278.650 kb on + strand, within CA264_09805at 2278.650 kb on + strand, within CA264_09805at 2278.784 kb on + strand, within CA264_09805at 2278.785 kb on - strand, within CA264_09805at 2278.785 kb on - strand, within CA264_09805at 2278.785 kb on - strand, within CA264_09805at 2278.797 kb on + strand, within CA264_09805at 2278.797 kb on + strand, within CA264_09805at 2278.820 kb on - strand, within CA264_09805at 2278.820 kb on - strand, within CA264_09805at 2278.821 kb on + strand, within CA264_09805at 2278.821 kb on + strand, within CA264_09805at 2278.821 kb on + strand, within CA264_09805at 2278.822 kb on - strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2278.898 kb on + strand, within CA264_09805at 2279.083 kb on + strand, within CA264_09805at 2279.083 kb on + strand, within CA264_09805at 2279.084 kb on - strand, within CA264_09805

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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2,276,374 + CA264_09795 0.85 -0.9
2,276,396 - CA264_09795 0.86 +0.4
2,276,396 - CA264_09795 0.86 -0.4
2,276,413 - CA264_09795 0.86 -0.1
2,276,418 + CA264_09795 0.87 +0.3
2,276,418 + CA264_09795 0.87 +1.1
2,276,418 + CA264_09795 0.87 -0.2
2,276,418 + CA264_09795 0.87 -0.3
2,276,419 - CA264_09795 0.87 +0.1
2,276,419 - CA264_09795 0.87 +0.1
2,276,419 - CA264_09795 0.87 -0.3
2,276,448 - CA264_09795 0.88 +0.8
2,276,492 - CA264_09795 0.89 -1.3
2,276,574 - +0.1
2,276,711 + +0.0
2,276,712 - -0.2
2,276,771 + +0.0
2,276,772 - -0.1
2,276,774 + +0.3
2,276,774 + -0.3
2,276,775 - -0.0
2,276,775 - +0.1
2,276,775 - -0.0
2,276,775 - +0.9
2,276,795 + +1.5
2,276,838 - +0.4
2,276,838 - +0.2
2,276,841 + -0.3
2,276,841 + +1.0
2,276,841 + -0.2
2,276,842 - +0.1
2,276,842 - -0.6
2,276,842 - -0.4
2,276,844 - -1.0
2,276,844 - +0.1
2,276,847 + -0.0
2,276,848 - -0.2
2,276,848 - +0.1
2,276,867 + -0.8
2,276,868 - +0.6
2,276,871 + +1.1
2,276,899 + +0.2
2,276,973 - -0.3
2,277,150 + -0.5
2,277,151 - -0.0
2,277,239 - +0.3
2,277,239 - +0.0
2,277,241 + -1.3
2,277,241 + +0.7
2,277,242 - +2.2
2,277,244 + +0.2
2,277,245 - -0.7
2,277,249 + +0.5
2,277,250 - +1.7
2,277,295 + +0.2
2,277,307 + +1.0
2,277,329 + +0.5
2,277,329 + -0.3
2,277,375 + -0.7
2,277,417 + +0.5
2,277,422 - -0.1
2,277,527 - CA264_09800 0.21 +0.1
2,277,574 - CA264_09800 0.28 +0.7
2,277,574 - CA264_09800 0.28 +1.8
2,277,601 - CA264_09800 0.31 +0.9
2,277,612 + CA264_09800 0.33 -1.2
2,277,697 + CA264_09800 0.45 -1.3
2,277,797 - CA264_09800 0.59 +1.4
2,277,810 + CA264_09800 0.60 +1.5
2,277,884 + CA264_09800 0.71 -0.1
2,277,896 + CA264_09800 0.72 -1.8
2,277,903 - CA264_09800 0.73 +0.7
2,277,935 + CA264_09800 0.78 +0.3
2,277,936 - CA264_09800 0.78 +0.4
2,277,936 - CA264_09800 0.78 +1.2
2,277,936 - CA264_09800 0.78 +0.8
2,277,944 - CA264_09800 0.79 +0.3
2,277,944 - CA264_09800 0.79 -0.7
2,277,947 + CA264_09800 0.79 +0.8
2,277,948 - CA264_09800 0.79 -0.9
2,277,948 - CA264_09800 0.79 +2.0
2,277,950 + CA264_09800 0.80 -1.2
2,277,951 - CA264_09800 0.80 +0.4
2,277,951 - CA264_09800 0.80 +1.2
2,278,013 + CA264_09800 0.88 +0.1
2,278,033 + -1.2
2,278,085 - -1.7
2,278,132 - -0.6
2,278,176 + -1.3
2,278,177 - +0.7
2,278,177 - +0.1
2,278,194 - -0.3
2,278,194 - -1.0
2,278,255 + +0.6
2,278,289 + -0.7
2,278,482 + -0.5
2,278,566 - +1.2
2,278,573 + -0.6
2,278,576 - +0.2
2,278,576 - -0.7
2,278,648 + CA264_09805 0.11 -0.3
2,278,648 + CA264_09805 0.11 +0.8
2,278,650 + CA264_09805 0.12 +1.1
2,278,650 + CA264_09805 0.12 +0.4
2,278,784 + CA264_09805 0.30 -0.5
2,278,785 - CA264_09805 0.30 +0.0
2,278,785 - CA264_09805 0.30 -0.7
2,278,785 - CA264_09805 0.30 -0.6
2,278,797 + CA264_09805 0.32 -0.4
2,278,797 + CA264_09805 0.32 +0.4
2,278,820 - CA264_09805 0.35 +0.3
2,278,820 - CA264_09805 0.35 -0.9
2,278,821 + CA264_09805 0.35 -0.1
2,278,821 + CA264_09805 0.35 -0.1
2,278,821 + CA264_09805 0.35 +0.7
2,278,822 - CA264_09805 0.35 +0.4
2,278,898 + CA264_09805 0.46 -0.3
2,278,898 + CA264_09805 0.46 -0.3
2,278,898 + CA264_09805 0.46 +0.2
2,278,898 + CA264_09805 0.46 +1.4
2,279,083 + CA264_09805 0.71 -0.1
2,279,083 + CA264_09805 0.71 +0.5
2,279,084 - CA264_09805 0.71 -1.0

Or see this region's nucleotide sequence