Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09175 and CA264_09180 are separated by 143 nucleotides CA264_09180 and CA264_09185 are separated by 352 nucleotides CA264_09185 and CA264_09190 overlap by 4 nucleotides
CA264_09175: CA264_09175 - nuclease PIN, at 2,149,924 to 2,150,787
_09175
CA264_09180: CA264_09180 - DNA-binding response regulator, at 2,150,931 to 2,151,581
_09180
CA264_09185: CA264_09185 - hypothetical protein, at 2,151,934 to 2,152,476
_09185
CA264_09190: CA264_09190 - hypothetical protein, at 2,152,473 to 2,152,808
_09190
Position (kb)
2150
2151
2152 Strain fitness (log2 ratio)
-2
-1
0
1 at 2149.940 kb on - strand at 2149.981 kb on - strand at 2150.092 kb on - strand, within CA264_09175 at 2150.153 kb on - strand, within CA264_09175 at 2150.192 kb on + strand, within CA264_09175 at 2150.233 kb on + strand, within CA264_09175 at 2150.369 kb on + strand, within CA264_09175 at 2150.391 kb on + strand, within CA264_09175 at 2150.519 kb on + strand, within CA264_09175 at 2150.794 kb on + strand at 2150.795 kb on - strand at 2150.795 kb on - strand at 2150.795 kb on - strand at 2150.803 kb on + strand at 2150.804 kb on - strand at 2150.821 kb on + strand at 2150.821 kb on + strand at 2150.832 kb on - strand at 2150.832 kb on - strand at 2150.832 kb on - strand at 2150.895 kb on + strand at 2150.896 kb on - strand at 2150.928 kb on - strand at 2150.932 kb on + strand at 2151.072 kb on - strand, within CA264_09180 at 2151.072 kb on - strand, within CA264_09180 at 2151.074 kb on - strand, within CA264_09180 at 2151.162 kb on - strand, within CA264_09180 at 2151.163 kb on + strand, within CA264_09180 at 2151.164 kb on - strand, within CA264_09180 at 2151.208 kb on + strand, within CA264_09180 at 2151.208 kb on + strand, within CA264_09180 at 2151.208 kb on + strand, within CA264_09180 at 2151.209 kb on - strand, within CA264_09180 at 2151.313 kb on + strand, within CA264_09180 at 2151.313 kb on + strand, within CA264_09180 at 2151.314 kb on - strand, within CA264_09180 at 2151.314 kb on - strand, within CA264_09180 at 2151.346 kb on - strand, within CA264_09180 at 2151.351 kb on + strand, within CA264_09180 at 2151.352 kb on - strand, within CA264_09180 at 2151.352 kb on - strand, within CA264_09180 at 2151.429 kb on + strand, within CA264_09180 at 2151.430 kb on - strand, within CA264_09180 at 2151.499 kb on - strand, within CA264_09180 at 2151.499 kb on - strand, within CA264_09180 at 2151.576 kb on - strand at 2151.581 kb on + strand at 2151.593 kb on + strand at 2151.594 kb on - strand at 2151.594 kb on - strand at 2151.624 kb on - strand at 2151.627 kb on - strand at 2151.765 kb on - strand at 2151.767 kb on - strand at 2151.776 kb on + strand at 2151.810 kb on - strand at 2151.882 kb on + strand at 2151.894 kb on + strand at 2151.900 kb on + strand at 2151.901 kb on - strand at 2151.992 kb on - strand, within CA264_09185 at 2152.037 kb on + strand, within CA264_09185 at 2152.037 kb on + strand, within CA264_09185 at 2152.063 kb on - strand, within CA264_09185 at 2152.154 kb on + strand, within CA264_09185 at 2152.305 kb on + strand, within CA264_09185 at 2152.306 kb on - strand, within CA264_09185 at 2152.374 kb on + strand, within CA264_09185 at 2152.377 kb on - strand, within CA264_09185 at 2152.456 kb on - strand at 2152.485 kb on + strand at 2152.485 kb on + strand at 2152.486 kb on - strand at 2152.487 kb on + strand at 2152.488 kb on - strand at 2152.550 kb on + strand, within CA264_09190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,149,940 - +0.5 2,149,981 - -1.1 2,150,092 - CA264_09175 0.19 -0.0 2,150,153 - CA264_09175 0.27 +0.0 2,150,192 + CA264_09175 0.31 +0.6 2,150,233 + CA264_09175 0.36 -0.3 2,150,369 + CA264_09175 0.52 +1.2 2,150,391 + CA264_09175 0.54 -0.2 2,150,519 + CA264_09175 0.69 -0.7 2,150,794 + +0.5 2,150,795 - -0.5 2,150,795 - -0.3 2,150,795 - -0.9 2,150,803 + -0.6 2,150,804 - -1.0 2,150,821 + -0.1 2,150,821 + -0.3 2,150,832 - -0.9 2,150,832 - -0.8 2,150,832 - +0.5 2,150,895 + -0.5 2,150,896 - -0.6 2,150,928 - -0.4 2,150,932 + -0.3 2,151,072 - CA264_09180 0.22 -0.8 2,151,072 - CA264_09180 0.22 -0.6 2,151,074 - CA264_09180 0.22 -0.8 2,151,162 - CA264_09180 0.35 -0.4 2,151,163 + CA264_09180 0.36 -2.0 2,151,164 - CA264_09180 0.36 +0.2 2,151,208 + CA264_09180 0.43 +1.4 2,151,208 + CA264_09180 0.43 -0.4 2,151,208 + CA264_09180 0.43 -0.7 2,151,209 - CA264_09180 0.43 -0.0 2,151,313 + CA264_09180 0.59 -0.6 2,151,313 + CA264_09180 0.59 +0.0 2,151,314 - CA264_09180 0.59 -0.5 2,151,314 - CA264_09180 0.59 -0.4 2,151,346 - CA264_09180 0.64 -0.6 2,151,351 + CA264_09180 0.65 -0.5 2,151,352 - CA264_09180 0.65 +0.3 2,151,352 - CA264_09180 0.65 -0.8 2,151,429 + CA264_09180 0.76 -0.5 2,151,430 - CA264_09180 0.77 +0.1 2,151,499 - CA264_09180 0.87 -0.5 2,151,499 - CA264_09180 0.87 -0.3 2,151,576 - +1.6 2,151,581 + -0.9 2,151,593 + -0.8 2,151,594 - -0.6 2,151,594 - -0.6 2,151,624 - -2.5 2,151,627 - -0.2 2,151,765 - -0.5 2,151,767 - -0.1 2,151,776 + -1.3 2,151,810 - -1.1 2,151,882 + -1.6 2,151,894 + -2.3 2,151,900 + -0.5 2,151,901 - -0.5 2,151,992 - CA264_09185 0.11 -0.4 2,152,037 + CA264_09185 0.19 -2.3 2,152,037 + CA264_09185 0.19 +0.9 2,152,063 - CA264_09185 0.24 -0.7 2,152,154 + CA264_09185 0.41 -0.3 2,152,305 + CA264_09185 0.68 -0.3 2,152,306 - CA264_09185 0.69 -0.1 2,152,374 + CA264_09185 0.81 -0.7 2,152,377 - CA264_09185 0.82 -0.5 2,152,456 - +0.0 2,152,485 + -1.1 2,152,485 + +0.1 2,152,486 - +0.4 2,152,487 + +0.3 2,152,488 - -0.6 2,152,550 + CA264_09190 0.23 +1.1
Or see this region's nucleotide sequence