Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09115 and CA264_09120 are separated by 105 nucleotides CA264_09120 and CA264_09125 are separated by 239 nucleotides
CA264_09115: CA264_09115 - hypothetical protein, at 2,134,830 to 2,135,507
_09115
CA264_09120: CA264_09120 - galactose-1-epimerase, at 2,135,613 to 2,136,797
_09120
CA264_09125: CA264_09125 - glucose/galactose MFS transporter, at 2,137,037 to 2,138,455
_09125
Position (kb)
2135
2136
2137 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2134.727 kb on + strand at 2134.815 kb on + strand at 2134.843 kb on + strand at 2134.863 kb on - strand at 2134.871 kb on + strand at 2134.872 kb on - strand at 2134.896 kb on + strand at 2134.896 kb on + strand at 2134.897 kb on - strand at 2134.905 kb on + strand, within CA264_09115 at 2135.041 kb on - strand, within CA264_09115 at 2135.194 kb on + strand, within CA264_09115 at 2135.195 kb on - strand, within CA264_09115 at 2135.195 kb on - strand, within CA264_09115 at 2135.195 kb on - strand, within CA264_09115 at 2135.253 kb on + strand, within CA264_09115 at 2135.254 kb on - strand, within CA264_09115 at 2135.313 kb on + strand, within CA264_09115 at 2135.511 kb on + strand at 2135.515 kb on + strand at 2135.516 kb on - strand at 2135.516 kb on - strand at 2135.571 kb on + strand at 2135.576 kb on + strand at 2135.595 kb on - strand at 2135.612 kb on + strand at 2135.674 kb on + strand at 2135.723 kb on + strand at 2135.742 kb on - strand, within CA264_09120 at 2135.805 kb on + strand, within CA264_09120 at 2135.806 kb on - strand, within CA264_09120 at 2135.844 kb on - strand, within CA264_09120 at 2135.844 kb on - strand, within CA264_09120 at 2135.850 kb on + strand, within CA264_09120 at 2135.937 kb on + strand, within CA264_09120 at 2136.029 kb on + strand, within CA264_09120 at 2136.030 kb on - strand, within CA264_09120 at 2136.030 kb on - strand, within CA264_09120 at 2136.030 kb on - strand, within CA264_09120 at 2136.030 kb on - strand, within CA264_09120 at 2136.030 kb on - strand, within CA264_09120 at 2136.071 kb on + strand, within CA264_09120 at 2136.141 kb on + strand, within CA264_09120 at 2136.141 kb on + strand, within CA264_09120 at 2136.141 kb on + strand, within CA264_09120 at 2136.142 kb on - strand, within CA264_09120 at 2136.234 kb on + strand, within CA264_09120 at 2136.285 kb on + strand, within CA264_09120 at 2136.291 kb on - strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.354 kb on + strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.355 kb on - strand, within CA264_09120 at 2136.356 kb on + strand, within CA264_09120 at 2136.357 kb on - strand, within CA264_09120 at 2136.357 kb on - strand, within CA264_09120 at 2136.403 kb on + strand, within CA264_09120 at 2136.477 kb on + strand, within CA264_09120 at 2136.486 kb on - strand, within CA264_09120 at 2136.537 kb on + strand, within CA264_09120 at 2136.537 kb on + strand, within CA264_09120 at 2136.597 kb on + strand, within CA264_09120 at 2136.648 kb on + strand, within CA264_09120 at 2136.722 kb on + strand at 2136.766 kb on - strand at 2137.009 kb on - strand at 2137.011 kb on + strand at 2137.011 kb on + strand at 2137.019 kb on + strand at 2137.100 kb on - strand at 2137.183 kb on - strand, within CA264_09125 at 2137.231 kb on - strand, within CA264_09125 at 2137.257 kb on - strand, within CA264_09125 at 2137.277 kb on + strand, within CA264_09125 at 2137.278 kb on - strand, within CA264_09125 at 2137.327 kb on + strand, within CA264_09125 at 2137.328 kb on - strand, within CA264_09125 at 2137.402 kb on + strand, within CA264_09125 at 2137.402 kb on + strand, within CA264_09125 at 2137.402 kb on + strand, within CA264_09125 at 2137.403 kb on - strand, within CA264_09125 at 2137.403 kb on - strand, within CA264_09125 at 2137.406 kb on + strand, within CA264_09125 at 2137.407 kb on - strand, within CA264_09125 at 2137.433 kb on - strand, within CA264_09125 at 2137.433 kb on - strand, within CA264_09125 at 2137.434 kb on + strand, within CA264_09125 at 2137.478 kb on + strand, within CA264_09125 at 2137.479 kb on - strand, within CA264_09125 at 2137.479 kb on - strand, within CA264_09125 at 2137.482 kb on + strand, within CA264_09125 at 2137.483 kb on - strand, within CA264_09125 at 2137.553 kb on - strand, within CA264_09125 at 2137.640 kb on + strand, within CA264_09125 at 2137.684 kb on + strand, within CA264_09125 at 2137.780 kb on + strand, within CA264_09125 at 2137.780 kb on + strand, within CA264_09125
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 2,134,727 + +0.3 2,134,815 + +0.7 2,134,843 + +0.2 2,134,863 - +0.5 2,134,871 + +1.4 2,134,872 - +0.3 2,134,896 + +0.6 2,134,896 + +1.0 2,134,897 - -0.4 2,134,905 + CA264_09115 0.11 +0.3 2,135,041 - CA264_09115 0.31 -0.6 2,135,194 + CA264_09115 0.54 +1.0 2,135,195 - CA264_09115 0.54 +0.4 2,135,195 - CA264_09115 0.54 +0.0 2,135,195 - CA264_09115 0.54 +0.8 2,135,253 + CA264_09115 0.62 +1.4 2,135,254 - CA264_09115 0.63 +0.7 2,135,313 + CA264_09115 0.71 +2.2 2,135,511 + +1.8 2,135,515 + +0.2 2,135,516 - -0.0 2,135,516 - +0.2 2,135,571 + +0.4 2,135,576 + +0.8 2,135,595 - +0.3 2,135,612 + +0.0 2,135,674 + +0.2 2,135,723 + -0.7 2,135,742 - CA264_09120 0.11 -0.3 2,135,805 + CA264_09120 0.16 +0.1 2,135,806 - CA264_09120 0.16 -0.6 2,135,844 - CA264_09120 0.19 -0.6 2,135,844 - CA264_09120 0.19 -0.3 2,135,850 + CA264_09120 0.20 +0.4 2,135,937 + CA264_09120 0.27 +0.5 2,136,029 + CA264_09120 0.35 +0.3 2,136,030 - CA264_09120 0.35 -0.4 2,136,030 - CA264_09120 0.35 -0.9 2,136,030 - CA264_09120 0.35 -0.6 2,136,030 - CA264_09120 0.35 -0.4 2,136,030 - CA264_09120 0.35 -0.2 2,136,071 + CA264_09120 0.39 +0.6 2,136,141 + CA264_09120 0.45 +0.5 2,136,141 + CA264_09120 0.45 +0.2 2,136,141 + CA264_09120 0.45 +1.0 2,136,142 - CA264_09120 0.45 +0.4 2,136,234 + CA264_09120 0.52 +0.3 2,136,285 + CA264_09120 0.57 -0.7 2,136,291 - CA264_09120 0.57 +1.2 2,136,354 + CA264_09120 0.63 +0.6 2,136,354 + CA264_09120 0.63 +0.9 2,136,354 + CA264_09120 0.63 +0.2 2,136,354 + CA264_09120 0.63 +0.5 2,136,355 - CA264_09120 0.63 -0.0 2,136,355 - CA264_09120 0.63 +0.4 2,136,355 - CA264_09120 0.63 -0.6 2,136,355 - CA264_09120 0.63 +0.1 2,136,356 + CA264_09120 0.63 +0.9 2,136,357 - CA264_09120 0.63 -0.4 2,136,357 - CA264_09120 0.63 -0.1 2,136,403 + CA264_09120 0.67 -0.3 2,136,477 + CA264_09120 0.73 +2.4 2,136,486 - CA264_09120 0.74 +0.1 2,136,537 + CA264_09120 0.78 +0.1 2,136,537 + CA264_09120 0.78 +0.6 2,136,597 + CA264_09120 0.83 +0.9 2,136,648 + CA264_09120 0.87 +0.1 2,136,722 + -0.1 2,136,766 - +1.0 2,137,009 - +1.2 2,137,011 + +0.4 2,137,011 + +0.3 2,137,019 + +0.2 2,137,100 - +0.1 2,137,183 - CA264_09125 0.10 -1.3 2,137,231 - CA264_09125 0.14 -2.2 2,137,257 - CA264_09125 0.16 -2.1 2,137,277 + CA264_09125 0.17 -1.0 2,137,278 - CA264_09125 0.17 -0.6 2,137,327 + CA264_09125 0.20 -0.3 2,137,328 - CA264_09125 0.21 -1.3 2,137,402 + CA264_09125 0.26 -1.8 2,137,402 + CA264_09125 0.26 -3.1 2,137,402 + CA264_09125 0.26 -0.4 2,137,403 - CA264_09125 0.26 -2.1 2,137,403 - CA264_09125 0.26 -2.7 2,137,406 + CA264_09125 0.26 -2.4 2,137,407 - CA264_09125 0.26 -2.1 2,137,433 - CA264_09125 0.28 -1.4 2,137,433 - CA264_09125 0.28 -1.3 2,137,434 + CA264_09125 0.28 -0.8 2,137,478 + CA264_09125 0.31 -1.7 2,137,479 - CA264_09125 0.31 -0.3 2,137,479 - CA264_09125 0.31 -2.4 2,137,482 + CA264_09125 0.31 -1.5 2,137,483 - CA264_09125 0.31 -1.1 2,137,553 - CA264_09125 0.36 -1.1 2,137,640 + CA264_09125 0.42 -3.2 2,137,684 + CA264_09125 0.46 -1.1 2,137,780 + CA264_09125 0.52 -1.6 2,137,780 + CA264_09125 0.52 -0.7
Or see this region's nucleotide sequence