Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08155

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08150 and CA264_08155 are separated by 66 nucleotidesCA264_08155 and CA264_08160 are separated by 42 nucleotides CA264_08150: CA264_08150 - radical SAM protein, at 1,881,572 to 1,882,636 _08150 CA264_08155: CA264_08155 - hypothetical protein, at 1,882,703 to 1,883,545 _08155 CA264_08160: CA264_08160 - catalase, at 1,883,588 to 1,884,475 _08160 Position (kb) 1882 1883 1884Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1881.739 kb on + strand, within CA264_08150at 1881.740 kb on - strand, within CA264_08150at 1881.785 kb on + strand, within CA264_08150at 1881.812 kb on + strand, within CA264_08150at 1881.848 kb on + strand, within CA264_08150at 1881.977 kb on + strand, within CA264_08150at 1881.986 kb on - strand, within CA264_08150at 1882.017 kb on + strand, within CA264_08150at 1882.076 kb on - strand, within CA264_08150at 1882.107 kb on + strand, within CA264_08150at 1882.107 kb on + strand, within CA264_08150at 1882.107 kb on + strand, within CA264_08150at 1882.108 kb on - strand, within CA264_08150at 1882.137 kb on + strand, within CA264_08150at 1882.137 kb on + strand, within CA264_08150at 1882.137 kb on + strand, within CA264_08150at 1882.137 kb on + strand, within CA264_08150at 1882.137 kb on + strand, within CA264_08150at 1882.147 kb on + strand, within CA264_08150at 1882.148 kb on - strand, within CA264_08150at 1882.218 kb on + strand, within CA264_08150at 1882.249 kb on - strand, within CA264_08150at 1882.270 kb on + strand, within CA264_08150at 1882.271 kb on - strand, within CA264_08150at 1882.306 kb on + strand, within CA264_08150at 1882.307 kb on + strand, within CA264_08150at 1882.346 kb on + strand, within CA264_08150at 1882.346 kb on + strand, within CA264_08150at 1882.346 kb on + strand, within CA264_08150at 1882.347 kb on - strand, within CA264_08150at 1882.348 kb on + strand, within CA264_08150at 1882.349 kb on - strand, within CA264_08150at 1882.522 kb on + strand, within CA264_08150at 1882.522 kb on + strand, within CA264_08150at 1882.523 kb on - strand, within CA264_08150at 1882.556 kb on + strandat 1882.556 kb on + strandat 1882.557 kb on - strandat 1882.557 kb on - strandat 1882.557 kb on - strandat 1882.583 kb on + strandat 1882.589 kb on + strandat 1882.590 kb on - strandat 1882.697 kb on + strandat 1882.697 kb on + strandat 1882.697 kb on + strandat 1882.697 kb on + strandat 1882.698 kb on - strandat 1882.698 kb on - strandat 1882.698 kb on - strandat 1882.698 kb on - strandat 1882.702 kb on + strandat 1882.703 kb on - strandat 1882.744 kb on - strandat 1882.903 kb on - strand, within CA264_08155at 1882.952 kb on - strand, within CA264_08155at 1883.175 kb on - strand, within CA264_08155at 1883.179 kb on + strand, within CA264_08155at 1883.180 kb on - strand, within CA264_08155at 1883.183 kb on + strand, within CA264_08155at 1883.321 kb on + strand, within CA264_08155at 1883.367 kb on + strand, within CA264_08155at 1883.407 kb on + strand, within CA264_08155at 1883.414 kb on - strand, within CA264_08155at 1883.432 kb on + strand, within CA264_08155at 1883.441 kb on + strand, within CA264_08155at 1883.441 kb on + strand, within CA264_08155at 1883.442 kb on - strand, within CA264_08155at 1883.544 kb on - strandat 1883.581 kb on + strandat 1883.581 kb on + strandat 1883.582 kb on - strandat 1883.583 kb on + strandat 1883.589 kb on + strandat 1883.589 kb on + strandat 1883.686 kb on + strand, within CA264_08160at 1883.826 kb on + strand, within CA264_08160at 1883.830 kb on + strand, within CA264_08160at 1883.831 kb on - strand, within CA264_08160at 1884.048 kb on + strand, within CA264_08160at 1884.049 kb on - strand, within CA264_08160at 1884.049 kb on - strand, within CA264_08160at 1884.052 kb on + strand, within CA264_08160at 1884.052 kb on + strand, within CA264_08160at 1884.052 kb on + strandat 1884.053 kb on - strand, within CA264_08160at 1884.053 kb on - strand, within CA264_08160at 1884.053 kb on - strand, within CA264_08160at 1884.053 kb on - strand, within CA264_08160at 1884.110 kb on - strand, within CA264_08160at 1884.117 kb on - strand, within CA264_08160at 1884.117 kb on - strand, within CA264_08160at 1884.132 kb on - strand, within CA264_08160at 1884.190 kb on + strand, within CA264_08160at 1884.368 kb on + strand, within CA264_08160at 1884.380 kb on + strand, within CA264_08160at 1884.380 kb on + strand, within CA264_08160at 1884.380 kb on + strand, within CA264_08160at 1884.381 kb on - strand, within CA264_08160at 1884.381 kb on - strand, within CA264_08160at 1884.401 kb on + strandat 1884.460 kb on + strandat 1884.461 kb on - strandat 1884.476 kb on - strandat 1884.476 kb on - strandat 1884.482 kb on - strandat 1884.489 kb on - strandat 1884.489 kb on - strandat 1884.493 kb on + strandat 1884.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,881,739 + CA264_08150 0.16 +1.4
1,881,740 - CA264_08150 0.16 -0.5
1,881,785 + CA264_08150 0.20 -1.0
1,881,812 + CA264_08150 0.23 -0.0
1,881,848 + CA264_08150 0.26 -0.3
1,881,977 + CA264_08150 0.38 -0.3
1,881,986 - CA264_08150 0.39 -1.4
1,882,017 + CA264_08150 0.42 +0.2
1,882,076 - CA264_08150 0.47 -0.5
1,882,107 + CA264_08150 0.50 -0.3
1,882,107 + CA264_08150 0.50 -3.6
1,882,107 + CA264_08150 0.50 +1.0
1,882,108 - CA264_08150 0.50 -2.3
1,882,137 + CA264_08150 0.53 -0.2
1,882,137 + CA264_08150 0.53 +0.4
1,882,137 + CA264_08150 0.53 -0.6
1,882,137 + CA264_08150 0.53 -0.6
1,882,137 + CA264_08150 0.53 +1.4
1,882,147 + CA264_08150 0.54 -1.7
1,882,148 - CA264_08150 0.54 -0.6
1,882,218 + CA264_08150 0.61 +0.4
1,882,249 - CA264_08150 0.64 -0.3
1,882,270 + CA264_08150 0.66 +0.8
1,882,271 - CA264_08150 0.66 +0.5
1,882,306 + CA264_08150 0.69 +0.1
1,882,307 + CA264_08150 0.69 +0.3
1,882,346 + CA264_08150 0.73 -0.1
1,882,346 + CA264_08150 0.73 -0.4
1,882,346 + CA264_08150 0.73 -0.1
1,882,347 - CA264_08150 0.73 -0.1
1,882,348 + CA264_08150 0.73 -0.5
1,882,349 - CA264_08150 0.73 +0.1
1,882,522 + CA264_08150 0.89 -1.4
1,882,522 + CA264_08150 0.89 +0.3
1,882,523 - CA264_08150 0.89 -0.5
1,882,556 + -0.0
1,882,556 + -1.0
1,882,557 - -0.4
1,882,557 - -1.0
1,882,557 - +0.1
1,882,583 + -0.2
1,882,589 + +1.0
1,882,590 - -0.8
1,882,697 + -0.6
1,882,697 + +0.0
1,882,697 + -0.5
1,882,697 + +0.6
1,882,698 - +1.2
1,882,698 - -1.5
1,882,698 - +0.2
1,882,698 - +0.0
1,882,702 + -0.8
1,882,703 - +0.2
1,882,744 - +0.4
1,882,903 - CA264_08155 0.24 -0.2
1,882,952 - CA264_08155 0.30 -0.7
1,883,175 - CA264_08155 0.56 +0.9
1,883,179 + CA264_08155 0.56 +0.8
1,883,180 - CA264_08155 0.57 -0.8
1,883,183 + CA264_08155 0.57 -0.2
1,883,321 + CA264_08155 0.73 -0.5
1,883,367 + CA264_08155 0.79 +0.7
1,883,407 + CA264_08155 0.84 -1.3
1,883,414 - CA264_08155 0.84 -0.5
1,883,432 + CA264_08155 0.86 -0.7
1,883,441 + CA264_08155 0.88 -2.5
1,883,441 + CA264_08155 0.88 -0.2
1,883,442 - CA264_08155 0.88 -1.5
1,883,544 - -0.0
1,883,581 + -1.0
1,883,581 + +0.4
1,883,582 - +0.1
1,883,583 + +0.7
1,883,589 + -0.5
1,883,589 + +0.4
1,883,686 + CA264_08160 0.11 +0.3
1,883,826 + CA264_08160 0.27 -0.0
1,883,830 + CA264_08160 0.27 +0.3
1,883,831 - CA264_08160 0.27 -0.2
1,884,048 + CA264_08160 0.52 +0.7
1,884,049 - CA264_08160 0.52 +0.4
1,884,049 - CA264_08160 0.52 -0.9
1,884,052 + CA264_08160 0.52 +0.4
1,884,052 + CA264_08160 0.52 +0.4
1,884,052 + +1.2
1,884,053 - CA264_08160 0.52 +1.5
1,884,053 - CA264_08160 0.52 -0.3
1,884,053 - CA264_08160 0.52 -0.4
1,884,053 - CA264_08160 0.52 -0.0
1,884,110 - CA264_08160 0.59 +0.7
1,884,117 - CA264_08160 0.60 -0.3
1,884,117 - CA264_08160 0.60 -0.6
1,884,132 - CA264_08160 0.61 -0.3
1,884,190 + CA264_08160 0.68 -0.1
1,884,368 + CA264_08160 0.88 -1.0
1,884,380 + CA264_08160 0.89 -0.6
1,884,380 + CA264_08160 0.89 -0.2
1,884,380 + CA264_08160 0.89 +0.6
1,884,381 - CA264_08160 0.89 +2.2
1,884,381 - CA264_08160 0.89 -1.9
1,884,401 + -0.2
1,884,460 + -0.0
1,884,461 - -0.3
1,884,476 - -0.3
1,884,476 - -0.9
1,884,482 - +0.2
1,884,489 - -1.0
1,884,489 - -0.8
1,884,493 + -1.1
1,884,493 + +0.0

Or see this region's nucleotide sequence