Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07350

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_07340 and CA264_07345 are separated by 276 nucleotidesCA264_07345 and CA264_07350 are separated by 76 nucleotidesCA264_07350 and CA264_07355 are separated by 136 nucleotidesCA264_07355 and CA264_07360 are separated by 65 nucleotides CA264_07340: CA264_07340 - hypothetical protein, at 1,694,749 to 1,695,312 _07340 CA264_07345: CA264_07345 - hypothetical protein, at 1,695,589 to 1,696,164 _07345 CA264_07350: CA264_07350 - hypothetical protein, at 1,696,241 to 1,696,936 _07350 CA264_07355: CA264_07355 - hypothetical protein, at 1,697,073 to 1,697,798 _07355 CA264_07360: CA264_07360 - hypothetical protein, at 1,697,864 to 1,698,100 _07360 Position (kb) 1696 1697Strain fitness (log2 ratio) -2 -1 0 1 2at 1695.241 kb on - strand, within CA264_07340at 1695.286 kb on + strandat 1695.315 kb on + strandat 1695.315 kb on + strandat 1695.315 kb on + strandat 1695.316 kb on - strandat 1695.316 kb on - strandat 1695.333 kb on + strandat 1695.400 kb on + strandat 1695.401 kb on - strandat 1695.569 kb on - strandat 1695.598 kb on - strandat 1695.599 kb on + strandat 1695.600 kb on - strandat 1695.600 kb on - strandat 1695.618 kb on - strandat 1695.618 kb on - strandat 1695.620 kb on + strandat 1695.621 kb on - strandat 1695.624 kb on + strandat 1695.650 kb on + strand, within CA264_07345at 1695.766 kb on - strand, within CA264_07345at 1695.771 kb on - strand, within CA264_07345at 1695.771 kb on - strand, within CA264_07345at 1695.774 kb on + strand, within CA264_07345at 1695.775 kb on - strand, within CA264_07345at 1695.775 kb on - strand, within CA264_07345at 1695.775 kb on - strand, within CA264_07345at 1695.782 kb on + strand, within CA264_07345at 1695.794 kb on + strand, within CA264_07345at 1695.800 kb on + strand, within CA264_07345at 1695.822 kb on - strand, within CA264_07345at 1695.916 kb on - strand, within CA264_07345at 1695.917 kb on + strand, within CA264_07345at 1695.933 kb on - strand, within CA264_07345at 1695.933 kb on - strand, within CA264_07345at 1695.948 kb on - strand, within CA264_07345at 1696.087 kb on - strand, within CA264_07345at 1696.105 kb on - strand, within CA264_07345at 1696.106 kb on + strand, within CA264_07345at 1696.146 kb on + strandat 1696.147 kb on - strandat 1696.175 kb on + strandat 1696.176 kb on - strandat 1696.230 kb on - strandat 1696.242 kb on + strandat 1696.242 kb on + strandat 1696.243 kb on - strandat 1696.266 kb on + strandat 1696.267 kb on - strandat 1696.321 kb on - strand, within CA264_07350at 1696.426 kb on - strand, within CA264_07350at 1696.521 kb on + strand, within CA264_07350at 1696.554 kb on + strand, within CA264_07350at 1696.554 kb on + strand, within CA264_07350at 1696.624 kb on - strand, within CA264_07350at 1696.624 kb on - strand, within CA264_07350at 1696.681 kb on - strand, within CA264_07350at 1696.717 kb on - strand, within CA264_07350at 1696.717 kb on - strand, within CA264_07350at 1696.744 kb on + strand, within CA264_07350at 1696.819 kb on - strand, within CA264_07350at 1696.911 kb on + strandat 1696.912 kb on - strandat 1696.912 kb on - strandat 1696.915 kb on + strandat 1696.915 kb on + strandat 1696.916 kb on - strandat 1696.943 kb on - strandat 1696.948 kb on - strandat 1696.955 kb on + strandat 1696.955 kb on + strandat 1696.981 kb on - strandat 1697.072 kb on + strandat 1697.073 kb on - strandat 1697.102 kb on + strandat 1697.102 kb on + strandat 1697.103 kb on - strandat 1697.103 kb on - strandat 1697.107 kb on - strandat 1697.107 kb on - strandat 1697.266 kb on - strand, within CA264_07355at 1697.268 kb on - strand, within CA264_07355at 1697.291 kb on + strand, within CA264_07355at 1697.291 kb on + strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.292 kb on - strand, within CA264_07355at 1697.301 kb on + strand, within CA264_07355at 1697.302 kb on - strand, within CA264_07355at 1697.313 kb on + strand, within CA264_07355at 1697.314 kb on - strand, within CA264_07355at 1697.355 kb on + strand, within CA264_07355at 1697.355 kb on + strand, within CA264_07355at 1697.385 kb on + strand, within CA264_07355at 1697.509 kb on + strand, within CA264_07355at 1697.510 kb on - strand, within CA264_07355at 1697.569 kb on - strand, within CA264_07355at 1697.593 kb on - strand, within CA264_07355at 1697.640 kb on - strand, within CA264_07355at 1697.644 kb on - strand, within CA264_07355at 1697.668 kb on - strand, within CA264_07355at 1697.697 kb on + strand, within CA264_07355at 1697.709 kb on + strand, within CA264_07355at 1697.709 kb on + strand, within CA264_07355at 1697.712 kb on - strand, within CA264_07355at 1697.791 kb on - strandat 1697.796 kb on + strandat 1697.796 kb on + strandat 1697.850 kb on + strandat 1697.851 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
1,695,241 - CA264_07340 0.87 +0.6
1,695,286 + -0.9
1,695,315 + -0.5
1,695,315 + -1.2
1,695,315 + -0.2
1,695,316 - -0.3
1,695,316 - -0.2
1,695,333 + -0.4
1,695,400 + -0.4
1,695,401 - +0.6
1,695,569 - +0.0
1,695,598 - -0.4
1,695,599 + +0.8
1,695,600 - +0.6
1,695,600 - -1.2
1,695,618 - -0.0
1,695,618 - -0.5
1,695,620 + -0.0
1,695,621 - -0.6
1,695,624 + +0.1
1,695,650 + CA264_07345 0.11 +1.1
1,695,766 - CA264_07345 0.31 -1.1
1,695,771 - CA264_07345 0.32 -0.9
1,695,771 - CA264_07345 0.32 -0.1
1,695,774 + CA264_07345 0.32 +0.3
1,695,775 - CA264_07345 0.32 -0.4
1,695,775 - CA264_07345 0.32 -0.9
1,695,775 - CA264_07345 0.32 -0.6
1,695,782 + CA264_07345 0.34 +0.2
1,695,794 + CA264_07345 0.36 -0.3
1,695,800 + CA264_07345 0.37 +0.1
1,695,822 - CA264_07345 0.40 +0.6
1,695,916 - CA264_07345 0.57 -1.1
1,695,917 + CA264_07345 0.57 +1.0
1,695,933 - CA264_07345 0.60 -0.2
1,695,933 - CA264_07345 0.60 -0.4
1,695,948 - CA264_07345 0.62 +0.3
1,696,087 - CA264_07345 0.86 -0.2
1,696,105 - CA264_07345 0.90 +0.4
1,696,106 + CA264_07345 0.90 -0.1
1,696,146 + -0.3
1,696,147 - -0.1
1,696,175 + -1.7
1,696,176 - -1.4
1,696,230 - +0.0
1,696,242 + +0.9
1,696,242 + +0.8
1,696,243 - +0.4
1,696,266 + -0.3
1,696,267 - -0.1
1,696,321 - CA264_07350 0.11 -0.3
1,696,426 - CA264_07350 0.27 +0.0
1,696,521 + CA264_07350 0.40 -0.3
1,696,554 + CA264_07350 0.45 -0.0
1,696,554 + CA264_07350 0.45 +1.4
1,696,624 - CA264_07350 0.55 -0.3
1,696,624 - CA264_07350 0.55 +0.5
1,696,681 - CA264_07350 0.63 +0.9
1,696,717 - CA264_07350 0.68 -0.1
1,696,717 - CA264_07350 0.68 -0.3
1,696,744 + CA264_07350 0.72 +0.8
1,696,819 - CA264_07350 0.83 -1.8
1,696,911 + -0.3
1,696,912 - -1.3
1,696,912 - +0.1
1,696,915 + +1.1
1,696,915 + -0.1
1,696,916 - -2.6
1,696,943 - +0.1
1,696,948 - +0.0
1,696,955 + +0.5
1,696,955 + +1.2
1,696,981 - -1.4
1,697,072 + +0.4
1,697,073 - -0.4
1,697,102 + +0.1
1,697,102 + -0.4
1,697,103 - -0.1
1,697,103 - -0.2
1,697,107 - +0.6
1,697,107 - -0.1
1,697,266 - CA264_07355 0.27 -1.0
1,697,268 - CA264_07355 0.27 -0.6
1,697,291 + CA264_07355 0.30 +0.5
1,697,291 + CA264_07355 0.30 -0.2
1,697,292 - CA264_07355 0.30 -0.8
1,697,292 - CA264_07355 0.30 +1.6
1,697,292 - CA264_07355 0.30 -0.7
1,697,301 + CA264_07355 0.31 +0.1
1,697,302 - CA264_07355 0.32 +0.8
1,697,313 + CA264_07355 0.33 -0.1
1,697,314 - CA264_07355 0.33 +0.1
1,697,355 + CA264_07355 0.39 -0.0
1,697,355 + CA264_07355 0.39 +0.1
1,697,385 + CA264_07355 0.43 +2.1
1,697,509 + CA264_07355 0.60 +0.8
1,697,510 - CA264_07355 0.60 +1.7
1,697,569 - CA264_07355 0.68 -1.5
1,697,593 - CA264_07355 0.72 -2.1
1,697,640 - CA264_07355 0.78 +0.0
1,697,644 - CA264_07355 0.79 -0.4
1,697,668 - CA264_07355 0.82 +0.7
1,697,697 + CA264_07355 0.86 -1.0
1,697,709 + CA264_07355 0.88 +1.4
1,697,709 + CA264_07355 0.88 +0.8
1,697,712 - CA264_07355 0.88 -0.1
1,697,791 - -0.3
1,697,796 + -1.0
1,697,796 + -0.1
1,697,850 + -1.2
1,697,851 - -0.3

Or see this region's nucleotide sequence