Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06445

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06435 and CA264_06440 are separated by 48 nucleotidesCA264_06440 and CA264_06445 are separated by 37 nucleotidesCA264_06445 and CA264_06450 are separated by 90 nucleotides CA264_06435: CA264_06435 - ATP-dependent endonuclease, at 1,491,314 to 1,492,720 _06435 CA264_06440: CA264_06440 - thioesterase, at 1,492,769 to 1,493,239 _06440 CA264_06445: CA264_06445 - NUDIX hydrolase, at 1,493,277 to 1,493,762 _06445 CA264_06450: CA264_06450 - hypothetical protein, at 1,493,853 to 1,494,740 _06450 Position (kb) 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1492.278 kb on + strand, within CA264_06435at 1492.279 kb on - strand, within CA264_06435at 1492.279 kb on - strand, within CA264_06435at 1492.349 kb on + strand, within CA264_06435at 1492.350 kb on - strand, within CA264_06435at 1492.354 kb on + strand, within CA264_06435at 1492.356 kb on + strand, within CA264_06435at 1492.356 kb on + strand, within CA264_06435at 1492.357 kb on - strand, within CA264_06435at 1492.364 kb on - strand, within CA264_06435at 1492.442 kb on - strand, within CA264_06435at 1492.442 kb on - strand, within CA264_06435at 1492.470 kb on + strand, within CA264_06435at 1492.481 kb on + strand, within CA264_06435at 1492.481 kb on + strand, within CA264_06435at 1492.518 kb on + strand, within CA264_06435at 1492.519 kb on - strand, within CA264_06435at 1492.522 kb on + strand, within CA264_06435at 1492.522 kb on + strand, within CA264_06435at 1492.523 kb on - strand, within CA264_06435at 1492.523 kb on - strand, within CA264_06435at 1492.587 kb on + strandat 1492.632 kb on - strandat 1492.633 kb on + strandat 1492.726 kb on + strandat 1492.730 kb on + strandat 1492.743 kb on + strandat 1492.775 kb on + strandat 1492.878 kb on + strand, within CA264_06440at 1492.878 kb on + strand, within CA264_06440at 1492.878 kb on + strand, within CA264_06440at 1492.879 kb on - strand, within CA264_06440at 1492.879 kb on - strand, within CA264_06440at 1492.926 kb on + strand, within CA264_06440at 1492.968 kb on + strand, within CA264_06440at 1493.042 kb on + strand, within CA264_06440at 1493.126 kb on + strand, within CA264_06440at 1493.126 kb on + strand, within CA264_06440at 1493.127 kb on - strand, within CA264_06440at 1493.141 kb on + strand, within CA264_06440at 1493.142 kb on - strand, within CA264_06440at 1493.201 kb on + strandat 1493.201 kb on + strandat 1493.202 kb on - strandat 1493.202 kb on - strandat 1493.226 kb on + strandat 1493.227 kb on - strandat 1493.227 kb on - strandat 1493.362 kb on + strand, within CA264_06445at 1493.444 kb on + strand, within CA264_06445at 1493.569 kb on + strand, within CA264_06445at 1493.668 kb on + strand, within CA264_06445at 1493.668 kb on + strand, within CA264_06445at 1493.749 kb on - strandat 1493.761 kb on - strandat 1493.761 kb on - strandat 1493.894 kb on - strandat 1493.894 kb on - strandat 1493.894 kb on - strandat 1493.940 kb on + strandat 1493.941 kb on - strandat 1494.193 kb on - strand, within CA264_06450at 1494.243 kb on + strand, within CA264_06450at 1494.297 kb on + strand, within CA264_06450at 1494.412 kb on - strand, within CA264_06450at 1494.432 kb on + strand, within CA264_06450at 1494.432 kb on + strand, within CA264_06450at 1494.433 kb on - strand, within CA264_06450at 1494.436 kb on + strand, within CA264_06450at 1494.437 kb on - strand, within CA264_06450at 1494.480 kb on - strand, within CA264_06450at 1494.517 kb on - strand, within CA264_06450at 1494.614 kb on - strand, within CA264_06450at 1494.624 kb on + strand, within CA264_06450at 1494.625 kb on - strand, within CA264_06450at 1494.638 kb on - strand, within CA264_06450at 1494.638 kb on - strand, within CA264_06450at 1494.669 kb on + strandat 1494.670 kb on - strandat 1494.676 kb on - strandat 1494.676 kb on - strandat 1494.677 kb on + strandat 1494.717 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
1,492,278 + CA264_06435 0.69 -0.4
1,492,279 - CA264_06435 0.69 -1.3
1,492,279 - CA264_06435 0.69 +0.3
1,492,349 + CA264_06435 0.74 +0.2
1,492,350 - CA264_06435 0.74 -0.4
1,492,354 + CA264_06435 0.74 -0.6
1,492,356 + CA264_06435 0.74 -0.3
1,492,356 + CA264_06435 0.74 -0.1
1,492,357 - CA264_06435 0.74 +1.0
1,492,364 - CA264_06435 0.75 +0.6
1,492,442 - CA264_06435 0.80 -0.7
1,492,442 - CA264_06435 0.80 -0.0
1,492,470 + CA264_06435 0.82 -1.6
1,492,481 + CA264_06435 0.83 -1.2
1,492,481 + CA264_06435 0.83 -0.3
1,492,518 + CA264_06435 0.86 -1.2
1,492,519 - CA264_06435 0.86 -0.2
1,492,522 + CA264_06435 0.86 +0.6
1,492,522 + CA264_06435 0.86 +0.0
1,492,523 - CA264_06435 0.86 -1.1
1,492,523 - CA264_06435 0.86 +1.0
1,492,587 + -0.0
1,492,632 - -0.1
1,492,633 + -1.7
1,492,726 + +1.2
1,492,730 + -0.4
1,492,743 + +0.5
1,492,775 + -0.2
1,492,878 + CA264_06440 0.23 +0.6
1,492,878 + CA264_06440 0.23 -1.8
1,492,878 + CA264_06440 0.23 -0.3
1,492,879 - CA264_06440 0.23 +0.1
1,492,879 - CA264_06440 0.23 +0.2
1,492,926 + CA264_06440 0.33 +0.1
1,492,968 + CA264_06440 0.42 -0.4
1,493,042 + CA264_06440 0.58 +0.4
1,493,126 + CA264_06440 0.76 -0.4
1,493,126 + CA264_06440 0.76 -0.8
1,493,127 - CA264_06440 0.76 -1.0
1,493,141 + CA264_06440 0.79 +0.3
1,493,142 - CA264_06440 0.79 -0.1
1,493,201 + -0.4
1,493,201 + +0.7
1,493,202 - +0.1
1,493,202 - +0.7
1,493,226 + +0.6
1,493,227 - -0.6
1,493,227 - -0.3
1,493,362 + CA264_06445 0.17 -1.6
1,493,444 + CA264_06445 0.34 +1.1
1,493,569 + CA264_06445 0.60 +0.9
1,493,668 + CA264_06445 0.80 +0.5
1,493,668 + CA264_06445 0.80 -0.1
1,493,749 - -0.5
1,493,761 - +0.1
1,493,761 - -0.2
1,493,894 - -0.6
1,493,894 - -0.3
1,493,894 - -0.4
1,493,940 + -1.2
1,493,941 - -2.3
1,494,193 - CA264_06450 0.38 -1.5
1,494,243 + CA264_06450 0.44 -0.4
1,494,297 + CA264_06450 0.50 +2.1
1,494,412 - CA264_06450 0.63 -0.7
1,494,432 + CA264_06450 0.65 -1.7
1,494,432 + CA264_06450 0.65 -1.8
1,494,433 - CA264_06450 0.65 +0.3
1,494,436 + CA264_06450 0.66 -0.8
1,494,437 - CA264_06450 0.66 -1.2
1,494,480 - CA264_06450 0.71 -2.4
1,494,517 - CA264_06450 0.75 +0.1
1,494,614 - CA264_06450 0.86 -3.6
1,494,624 + CA264_06450 0.87 -0.7
1,494,625 - CA264_06450 0.87 -1.0
1,494,638 - CA264_06450 0.88 -2.9
1,494,638 - CA264_06450 0.88 -1.5
1,494,669 + -1.1
1,494,670 - -0.9
1,494,676 - -2.2
1,494,676 - +0.9
1,494,677 + -0.3
1,494,717 + +0.3

Or see this region's nucleotide sequence