Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06385

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06380 and CA264_06385 are separated by 238 nucleotidesCA264_06385 and CA264_06390 are separated by 25 nucleotidesCA264_06390 and CA264_06395 are separated by 154 nucleotides CA264_06380: CA264_06380 - FAD-dependent oxidoreductase, at 1,482,478 to 1,484,010 _06380 CA264_06385: CA264_06385 - tRNA-binding protein, at 1,484,249 to 1,484,584 _06385 CA264_06390: CA264_06390 - hypothetical protein, at 1,484,610 to 1,484,906 _06390 CA264_06395: CA264_06395 - DUF58 domain-containing protein, at 1,485,061 to 1,485,942 _06395 Position (kb) 1484 1485Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1483.250 kb on + strand, within CA264_06380at 1483.250 kb on + strand, within CA264_06380at 1483.276 kb on - strand, within CA264_06380at 1483.276 kb on - strand, within CA264_06380at 1483.344 kb on - strand, within CA264_06380at 1483.410 kb on - strand, within CA264_06380at 1483.458 kb on - strand, within CA264_06380at 1483.628 kb on + strand, within CA264_06380at 1483.657 kb on + strand, within CA264_06380at 1483.658 kb on - strand, within CA264_06380at 1483.749 kb on + strand, within CA264_06380at 1483.750 kb on - strand, within CA264_06380at 1483.761 kb on - strand, within CA264_06380at 1483.763 kb on + strand, within CA264_06380at 1483.764 kb on - strand, within CA264_06380at 1483.764 kb on - strand, within CA264_06380at 1483.764 kb on - strand, within CA264_06380at 1483.767 kb on + strand, within CA264_06380at 1483.767 kb on + strand, within CA264_06380at 1483.767 kb on + strand, within CA264_06380at 1483.783 kb on - strand, within CA264_06380at 1483.822 kb on + strand, within CA264_06380at 1483.823 kb on - strand, within CA264_06380at 1483.875 kb on - strandat 1483.875 kb on - strandat 1483.963 kb on + strandat 1484.018 kb on + strandat 1484.018 kb on + strandat 1484.019 kb on - strandat 1484.082 kb on - strandat 1484.098 kb on + strandat 1484.099 kb on - strandat 1484.106 kb on + strandat 1484.106 kb on + strandat 1484.107 kb on - strandat 1484.107 kb on - strandat 1484.109 kb on - strandat 1484.184 kb on + strandat 1484.216 kb on + strandat 1484.216 kb on + strandat 1484.216 kb on + strandat 1484.217 kb on - strandat 1484.217 kb on - strandat 1484.219 kb on - strandat 1484.219 kb on - strandat 1484.219 kb on - strandat 1484.222 kb on + strandat 1484.222 kb on + strandat 1484.222 kb on + strandat 1484.223 kb on - strandat 1484.304 kb on + strand, within CA264_06385at 1484.304 kb on + strand, within CA264_06385at 1484.305 kb on - strand, within CA264_06385at 1484.307 kb on + strand, within CA264_06385at 1484.307 kb on + strand, within CA264_06385at 1484.347 kb on + strand, within CA264_06385at 1484.347 kb on + strand, within CA264_06385at 1484.348 kb on - strand, within CA264_06385at 1484.348 kb on - strand, within CA264_06385at 1484.352 kb on + strand, within CA264_06385at 1484.352 kb on + strand, within CA264_06385at 1484.353 kb on - strand, within CA264_06385at 1484.358 kb on + strand, within CA264_06385at 1484.359 kb on - strand, within CA264_06385at 1484.412 kb on - strand, within CA264_06385at 1484.451 kb on + strand, within CA264_06385at 1484.497 kb on - strand, within CA264_06385at 1484.530 kb on + strand, within CA264_06385at 1484.531 kb on - strand, within CA264_06385at 1484.531 kb on - strand, within CA264_06385at 1484.535 kb on + strand, within CA264_06385at 1484.535 kb on + strand, within CA264_06385at 1484.580 kb on + strandat 1484.581 kb on - strandat 1484.581 kb on - strandat 1484.581 kb on - strandat 1484.582 kb on + strandat 1484.612 kb on - strandat 1484.612 kb on - strandat 1484.612 kb on - strandat 1484.616 kb on + strandat 1484.617 kb on - strandat 1484.617 kb on - strandat 1485.022 kb on - strandat 1485.028 kb on + strandat 1485.074 kb on + strandat 1485.098 kb on + strandat 1485.099 kb on - strandat 1485.105 kb on - strandat 1485.197 kb on - strand, within CA264_06395at 1485.216 kb on + strand, within CA264_06395at 1485.426 kb on + strand, within CA264_06395at 1485.438 kb on + strand, within CA264_06395at 1485.448 kb on + strand, within CA264_06395at 1485.448 kb on + strand, within CA264_06395at 1485.449 kb on - strand, within CA264_06395at 1485.482 kb on - strand, within CA264_06395at 1485.491 kb on + strand, within CA264_06395at 1485.491 kb on + strand, within CA264_06395at 1485.492 kb on - strand, within CA264_06395at 1485.492 kb on - strand, within CA264_06395at 1485.494 kb on - strand, within CA264_06395at 1485.548 kb on + strand, within CA264_06395at 1485.549 kb on - strand, within CA264_06395

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,483,250 + CA264_06380 0.50 +1.0
1,483,250 + CA264_06380 0.50 +1.1
1,483,276 - CA264_06380 0.52 -0.2
1,483,276 - CA264_06380 0.52 -0.0
1,483,344 - CA264_06380 0.56 -0.1
1,483,410 - CA264_06380 0.61 -0.4
1,483,458 - CA264_06380 0.64 +1.0
1,483,628 + CA264_06380 0.75 -0.1
1,483,657 + CA264_06380 0.77 +0.2
1,483,658 - CA264_06380 0.77 +0.7
1,483,749 + CA264_06380 0.83 +0.1
1,483,750 - CA264_06380 0.83 +0.3
1,483,761 - CA264_06380 0.84 -0.3
1,483,763 + CA264_06380 0.84 +1.4
1,483,764 - CA264_06380 0.84 +0.2
1,483,764 - CA264_06380 0.84 -0.0
1,483,764 - CA264_06380 0.84 -0.2
1,483,767 + CA264_06380 0.84 +0.6
1,483,767 + CA264_06380 0.84 +1.2
1,483,767 + CA264_06380 0.84 +0.2
1,483,783 - CA264_06380 0.85 -1.4
1,483,822 + CA264_06380 0.88 +0.4
1,483,823 - CA264_06380 0.88 -0.8
1,483,875 - +0.2
1,483,875 - +0.3
1,483,963 + +1.0
1,484,018 + +0.6
1,484,018 + +0.4
1,484,019 - -0.9
1,484,082 - +0.7
1,484,098 + +0.4
1,484,099 - +1.4
1,484,106 + +0.8
1,484,106 + +0.2
1,484,107 - +0.3
1,484,107 - +0.1
1,484,109 - +0.5
1,484,184 + +1.1
1,484,216 + +0.6
1,484,216 + +1.3
1,484,216 + +0.3
1,484,217 - +0.2
1,484,217 - -1.3
1,484,219 - +0.4
1,484,219 - -1.0
1,484,219 - +0.4
1,484,222 + +0.3
1,484,222 + +1.3
1,484,222 + +0.3
1,484,223 - +0.2
1,484,304 + CA264_06385 0.16 +0.7
1,484,304 + CA264_06385 0.16 +1.8
1,484,305 - CA264_06385 0.17 -0.3
1,484,307 + CA264_06385 0.17 +0.9
1,484,307 + CA264_06385 0.17 +0.4
1,484,347 + CA264_06385 0.29 +0.8
1,484,347 + CA264_06385 0.29 +1.0
1,484,348 - CA264_06385 0.29 +1.1
1,484,348 - CA264_06385 0.29 +0.4
1,484,352 + CA264_06385 0.31 +0.3
1,484,352 + CA264_06385 0.31 +1.0
1,484,353 - CA264_06385 0.31 +0.4
1,484,358 + CA264_06385 0.32 +0.9
1,484,359 - CA264_06385 0.33 +0.7
1,484,412 - CA264_06385 0.49 +0.8
1,484,451 + CA264_06385 0.60 +0.2
1,484,497 - CA264_06385 0.74 -2.8
1,484,530 + CA264_06385 0.84 +0.5
1,484,531 - CA264_06385 0.84 -0.7
1,484,531 - CA264_06385 0.84 +0.7
1,484,535 + CA264_06385 0.85 +0.7
1,484,535 + CA264_06385 0.85 +0.7
1,484,580 + +0.4
1,484,581 - -0.3
1,484,581 - +0.2
1,484,581 - +1.6
1,484,582 + +0.6
1,484,612 - +0.7
1,484,612 - +0.2
1,484,612 - -1.6
1,484,616 + +0.6
1,484,617 - -0.4
1,484,617 - +0.2
1,485,022 - +0.3
1,485,028 + -0.3
1,485,074 + +0.3
1,485,098 + +1.1
1,485,099 - +1.1
1,485,105 - +0.3
1,485,197 - CA264_06395 0.15 -0.3
1,485,216 + CA264_06395 0.18 +1.0
1,485,426 + CA264_06395 0.41 +1.1
1,485,438 + CA264_06395 0.43 -0.0
1,485,448 + CA264_06395 0.44 +0.7
1,485,448 + CA264_06395 0.44 +0.5
1,485,449 - CA264_06395 0.44 -0.4
1,485,482 - CA264_06395 0.48 +0.1
1,485,491 + CA264_06395 0.49 -0.4
1,485,491 + CA264_06395 0.49 -0.3
1,485,492 - CA264_06395 0.49 -0.1
1,485,492 - CA264_06395 0.49 +0.6
1,485,494 - CA264_06395 0.49 +0.2
1,485,548 + CA264_06395 0.55 +0.2
1,485,549 - CA264_06395 0.55 -0.4

Or see this region's nucleotide sequence