Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05905

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05900 and CA264_05905 are separated by 72 nucleotidesCA264_05905 and CA264_05910 are separated by 470 nucleotides CA264_05900: CA264_05900 - aminoacetone oxidase family FAD-binding enzyme, at 1,373,098 to 1,374,333 _05900 CA264_05905: CA264_05905 - hypothetical protein, at 1,374,406 to 1,374,858 _05905 CA264_05910: CA264_05910 - RNA helicase, at 1,375,329 to 1,377,149 _05910 Position (kb) 1374 1375Strain fitness (log2 ratio) -2 -1 0 1 2at 1373.421 kb on + strand, within CA264_05900at 1373.480 kb on + strand, within CA264_05900at 1373.529 kb on + strand, within CA264_05900at 1373.558 kb on + strand, within CA264_05900at 1373.559 kb on - strand, within CA264_05900at 1373.737 kb on - strand, within CA264_05900at 1373.758 kb on + strand, within CA264_05900at 1373.862 kb on + strand, within CA264_05900at 1373.862 kb on + strand, within CA264_05900at 1374.011 kb on + strand, within CA264_05900at 1374.012 kb on - strand, within CA264_05900at 1374.032 kb on + strand, within CA264_05900at 1374.032 kb on + strand, within CA264_05900at 1374.032 kb on + strand, within CA264_05900at 1374.033 kb on - strand, within CA264_05900at 1374.060 kb on + strand, within CA264_05900at 1374.067 kb on - strand, within CA264_05900at 1374.111 kb on + strand, within CA264_05900at 1374.138 kb on + strand, within CA264_05900at 1374.209 kb on - strand, within CA264_05900at 1374.255 kb on + strandat 1374.374 kb on + strandat 1374.376 kb on + strandat 1374.376 kb on + strandat 1374.376 kb on + strandat 1374.376 kb on + strandat 1374.376 kb on + strandat 1374.376 kb on + strandat 1374.377 kb on - strandat 1374.377 kb on - strandat 1374.377 kb on - strandat 1374.381 kb on + strandat 1374.382 kb on - strandat 1374.390 kb on + strandat 1374.390 kb on + strandat 1374.391 kb on - strandat 1374.393 kb on + strandat 1374.393 kb on + strandat 1374.405 kb on + strandat 1374.425 kb on + strandat 1374.433 kb on - strandat 1374.460 kb on - strand, within CA264_05905at 1374.460 kb on - strand, within CA264_05905at 1374.460 kb on - strand, within CA264_05905at 1374.480 kb on + strand, within CA264_05905at 1374.480 kb on + strand, within CA264_05905at 1374.480 kb on + strand, within CA264_05905at 1374.480 kb on + strand, within CA264_05905at 1374.480 kb on + strand, within CA264_05905at 1374.481 kb on - strand, within CA264_05905at 1374.481 kb on - strand, within CA264_05905at 1374.481 kb on - strand, within CA264_05905at 1374.535 kb on + strand, within CA264_05905at 1374.535 kb on + strand, within CA264_05905at 1374.726 kb on + strand, within CA264_05905at 1374.727 kb on - strand, within CA264_05905at 1374.794 kb on - strand, within CA264_05905at 1374.802 kb on - strand, within CA264_05905at 1374.846 kb on + strandat 1374.867 kb on - strandat 1374.867 kb on - strandat 1374.869 kb on + strandat 1374.875 kb on + strandat 1374.944 kb on + strandat 1374.944 kb on + strandat 1374.945 kb on - strandat 1375.061 kb on + strandat 1375.062 kb on - strandat 1375.069 kb on + strandat 1375.069 kb on + strandat 1375.069 kb on + strandat 1375.116 kb on + strandat 1375.133 kb on - strandat 1375.138 kb on - strandat 1375.155 kb on - strandat 1375.191 kb on + strandat 1375.192 kb on - strandat 1375.330 kb on + strandat 1375.331 kb on - strandat 1375.601 kb on - strand, within CA264_05910at 1375.675 kb on + strand, within CA264_05910

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,373,421 + CA264_05900 0.26 +0.0
1,373,480 + CA264_05900 0.31 +0.0
1,373,529 + CA264_05900 0.35 -0.3
1,373,558 + CA264_05900 0.37 -0.1
1,373,559 - CA264_05900 0.37 -0.1
1,373,737 - CA264_05900 0.52 +0.2
1,373,758 + CA264_05900 0.53 -1.8
1,373,862 + CA264_05900 0.62 +0.3
1,373,862 + CA264_05900 0.62 -0.3
1,374,011 + CA264_05900 0.74 +0.7
1,374,012 - CA264_05900 0.74 +0.4
1,374,032 + CA264_05900 0.76 +0.2
1,374,032 + CA264_05900 0.76 +0.2
1,374,032 + CA264_05900 0.76 -0.3
1,374,033 - CA264_05900 0.76 -0.3
1,374,060 + CA264_05900 0.78 +0.7
1,374,067 - CA264_05900 0.78 -2.2
1,374,111 + CA264_05900 0.82 -0.9
1,374,138 + CA264_05900 0.84 +0.6
1,374,209 - CA264_05900 0.90 -0.4
1,374,255 + +0.2
1,374,374 + +0.3
1,374,376 + +0.1
1,374,376 + -0.2
1,374,376 + -0.3
1,374,376 + +0.0
1,374,376 + +1.5
1,374,376 + +0.0
1,374,377 - +0.1
1,374,377 - -0.6
1,374,377 - -0.5
1,374,381 + -0.1
1,374,382 - +0.7
1,374,390 + -0.7
1,374,390 + +0.6
1,374,391 - +0.2
1,374,393 + -0.1
1,374,393 + -0.2
1,374,405 + +0.4
1,374,425 + -0.3
1,374,433 - +0.7
1,374,460 - CA264_05905 0.12 +0.5
1,374,460 - CA264_05905 0.12 +0.9
1,374,460 - CA264_05905 0.12 +1.4
1,374,480 + CA264_05905 0.16 -0.4
1,374,480 + CA264_05905 0.16 -0.2
1,374,480 + CA264_05905 0.16 -0.1
1,374,480 + CA264_05905 0.16 -0.4
1,374,480 + CA264_05905 0.16 +2.0
1,374,481 - CA264_05905 0.17 +0.9
1,374,481 - CA264_05905 0.17 +0.1
1,374,481 - CA264_05905 0.17 -0.7
1,374,535 + CA264_05905 0.28 +1.1
1,374,535 + CA264_05905 0.28 -0.5
1,374,726 + CA264_05905 0.71 +0.2
1,374,727 - CA264_05905 0.71 +0.3
1,374,794 - CA264_05905 0.86 +0.8
1,374,802 - CA264_05905 0.87 +0.1
1,374,846 + +0.5
1,374,867 - -1.4
1,374,867 - +0.2
1,374,869 + -2.1
1,374,875 + -1.0
1,374,944 + -0.2
1,374,944 + -1.4
1,374,945 - +0.5
1,375,061 + -0.4
1,375,062 - -0.1
1,375,069 + +0.6
1,375,069 + -0.6
1,375,069 + +0.1
1,375,116 + -0.5
1,375,133 - -0.3
1,375,138 - -0.2
1,375,155 - +0.5
1,375,191 + -0.4
1,375,192 - -0.2
1,375,330 + -0.7
1,375,331 - +0.4
1,375,601 - CA264_05910 0.15 -0.4
1,375,675 + CA264_05910 0.19 -0.1

Or see this region's nucleotide sequence