Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05035

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05030 and CA264_05035 overlap by 8 nucleotidesCA264_05035 and CA264_05040 are separated by 76 nucleotides CA264_05030: CA264_05030 - histidinol dehydrogenase, at 1,166,391 to 1,167,680 _05030 CA264_05035: CA264_05035 - histidinol-phosphate transaminase, at 1,167,673 to 1,168,728 _05035 CA264_05040: CA264_05040 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 1,168,805 to 1,169,908 _05040 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -3 -2 -1 0 1at 1166.698 kb on + strand, within CA264_05030at 1166.760 kb on + strand, within CA264_05030at 1166.853 kb on - strand, within CA264_05030at 1166.879 kb on - strand, within CA264_05030at 1166.888 kb on + strand, within CA264_05030at 1166.888 kb on + strand, within CA264_05030at 1166.889 kb on - strand, within CA264_05030at 1166.891 kb on - strand, within CA264_05030at 1166.891 kb on - strand, within CA264_05030at 1166.895 kb on + strand, within CA264_05030at 1166.895 kb on + strand, within CA264_05030at 1166.896 kb on - strand, within CA264_05030at 1166.896 kb on - strand, within CA264_05030at 1167.002 kb on - strand, within CA264_05030at 1167.021 kb on + strand, within CA264_05030at 1167.025 kb on + strand, within CA264_05030at 1167.025 kb on + strand, within CA264_05030at 1167.133 kb on + strand, within CA264_05030at 1167.133 kb on + strand, within CA264_05030at 1167.145 kb on + strand, within CA264_05030at 1167.190 kb on + strand, within CA264_05030at 1167.287 kb on + strand, within CA264_05030at 1167.299 kb on + strand, within CA264_05030at 1167.300 kb on - strand, within CA264_05030at 1167.338 kb on + strand, within CA264_05030at 1167.405 kb on - strand, within CA264_05030at 1167.531 kb on - strand, within CA264_05030at 1167.558 kb on + strandat 1167.591 kb on - strandat 1167.646 kb on + strandat 1167.646 kb on + strandat 1167.647 kb on - strandat 1167.651 kb on - strandat 1167.652 kb on + strandat 1167.659 kb on + strandat 1167.800 kb on + strand, within CA264_05035at 1167.815 kb on - strand, within CA264_05035at 1167.816 kb on + strand, within CA264_05035at 1167.848 kb on + strand, within CA264_05035at 1167.869 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.923 kb on + strand, within CA264_05035at 1167.924 kb on - strand, within CA264_05035at 1167.924 kb on - strand, within CA264_05035at 1167.997 kb on + strand, within CA264_05035at 1167.998 kb on - strand, within CA264_05035at 1167.998 kb on - strand, within CA264_05035at 1167.998 kb on - strand, within CA264_05035at 1168.099 kb on - strand, within CA264_05035at 1168.152 kb on - strand, within CA264_05035at 1168.152 kb on - strand, within CA264_05035at 1168.165 kb on - strand, within CA264_05035at 1168.167 kb on - strand, within CA264_05035at 1168.179 kb on + strand, within CA264_05035at 1168.179 kb on + strand, within CA264_05035at 1168.180 kb on - strand, within CA264_05035at 1168.180 kb on - strand, within CA264_05035at 1168.200 kb on - strand, within CA264_05035at 1168.217 kb on - strand, within CA264_05035at 1168.362 kb on - strand, within CA264_05035at 1168.365 kb on - strand, within CA264_05035at 1168.384 kb on + strand, within CA264_05035at 1168.528 kb on + strand, within CA264_05035at 1168.617 kb on + strand, within CA264_05035at 1168.657 kb on - strandat 1168.791 kb on - strandat 1168.962 kb on + strand, within CA264_05040at 1169.005 kb on + strand, within CA264_05040at 1169.059 kb on - strand, within CA264_05040at 1169.296 kb on + strand, within CA264_05040at 1169.296 kb on + strand, within CA264_05040at 1169.297 kb on - strand, within CA264_05040at 1169.300 kb on + strand, within CA264_05040at 1169.508 kb on + strand, within CA264_05040at 1169.509 kb on - strand, within CA264_05040at 1169.562 kb on + strand, within CA264_05040at 1169.673 kb on + strand, within CA264_05040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
1,166,698 + CA264_05030 0.24 +0.6
1,166,760 + CA264_05030 0.29 -0.8
1,166,853 - CA264_05030 0.36 -0.2
1,166,879 - CA264_05030 0.38 +0.8
1,166,888 + CA264_05030 0.39 +0.5
1,166,888 + CA264_05030 0.39 -0.6
1,166,889 - CA264_05030 0.39 -0.2
1,166,891 - CA264_05030 0.39 +0.5
1,166,891 - CA264_05030 0.39 -1.0
1,166,895 + CA264_05030 0.39 -0.5
1,166,895 + CA264_05030 0.39 +1.2
1,166,896 - CA264_05030 0.39 -0.9
1,166,896 - CA264_05030 0.39 +0.2
1,167,002 - CA264_05030 0.47 -1.1
1,167,021 + CA264_05030 0.49 +0.0
1,167,025 + CA264_05030 0.49 +1.7
1,167,025 + CA264_05030 0.49 +0.5
1,167,133 + CA264_05030 0.58 +0.3
1,167,133 + CA264_05030 0.58 -0.6
1,167,145 + CA264_05030 0.58 -0.0
1,167,190 + CA264_05030 0.62 -0.7
1,167,287 + CA264_05030 0.69 -0.1
1,167,299 + CA264_05030 0.70 -0.4
1,167,300 - CA264_05030 0.70 -0.3
1,167,338 + CA264_05030 0.73 +0.2
1,167,405 - CA264_05030 0.79 +0.5
1,167,531 - CA264_05030 0.88 +0.7
1,167,558 + +0.2
1,167,591 - +0.2
1,167,646 + -2.6
1,167,646 + -0.4
1,167,647 - -0.4
1,167,651 - -1.8
1,167,652 + -0.2
1,167,659 + -0.8
1,167,800 + CA264_05035 0.12 +0.5
1,167,815 - CA264_05035 0.13 -1.2
1,167,816 + CA264_05035 0.14 -1.2
1,167,848 + CA264_05035 0.17 -1.1
1,167,869 + CA264_05035 0.19 -2.8
1,167,923 + CA264_05035 0.24 -0.7
1,167,923 + CA264_05035 0.24 -0.3
1,167,923 + CA264_05035 0.24 -1.0
1,167,923 + CA264_05035 0.24 +0.3
1,167,924 - CA264_05035 0.24 -1.1
1,167,924 - CA264_05035 0.24 -0.4
1,167,997 + CA264_05035 0.31 -0.4
1,167,998 - CA264_05035 0.31 -0.0
1,167,998 - CA264_05035 0.31 -0.2
1,167,998 - CA264_05035 0.31 +0.2
1,168,099 - CA264_05035 0.40 +0.6
1,168,152 - CA264_05035 0.45 +0.6
1,168,152 - CA264_05035 0.45 +0.2
1,168,165 - CA264_05035 0.47 -0.6
1,168,167 - CA264_05035 0.47 +0.0
1,168,179 + CA264_05035 0.48 -0.8
1,168,179 + CA264_05035 0.48 -0.1
1,168,180 - CA264_05035 0.48 -1.3
1,168,180 - CA264_05035 0.48 -0.8
1,168,200 - CA264_05035 0.50 +0.3
1,168,217 - CA264_05035 0.52 -0.9
1,168,362 - CA264_05035 0.65 -0.4
1,168,365 - CA264_05035 0.66 -1.4
1,168,384 + CA264_05035 0.67 -0.7
1,168,528 + CA264_05035 0.81 -1.5
1,168,617 + CA264_05035 0.89 -1.4
1,168,657 - -0.3
1,168,791 - -1.0
1,168,962 + CA264_05040 0.14 +0.2
1,169,005 + CA264_05040 0.18 -0.2
1,169,059 - CA264_05040 0.23 +0.0
1,169,296 + CA264_05040 0.44 -0.1
1,169,296 + CA264_05040 0.44 +1.7
1,169,297 - CA264_05040 0.45 +0.2
1,169,300 + CA264_05040 0.45 -0.1
1,169,508 + CA264_05040 0.64 +0.6
1,169,509 - CA264_05040 0.64 +0.3
1,169,562 + CA264_05040 0.69 -0.6
1,169,673 + CA264_05040 0.79 -0.7

Or see this region's nucleotide sequence