Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05030 and CA264_05035 overlap by 8 nucleotides CA264_05035 and CA264_05040 are separated by 76 nucleotides
CA264_05030: CA264_05030 - histidinol dehydrogenase, at 1,166,391 to 1,167,680
_05030
CA264_05035: CA264_05035 - histidinol-phosphate transaminase, at 1,167,673 to 1,168,728
_05035
CA264_05040: CA264_05040 - bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase, at 1,168,805 to 1,169,908
_05040
Position (kb)
1167
1168
1169 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1166.698 kb on + strand, within CA264_05030 at 1166.760 kb on + strand, within CA264_05030 at 1166.853 kb on - strand, within CA264_05030 at 1166.879 kb on - strand, within CA264_05030 at 1166.888 kb on + strand, within CA264_05030 at 1166.888 kb on + strand, within CA264_05030 at 1166.889 kb on - strand, within CA264_05030 at 1166.891 kb on - strand, within CA264_05030 at 1166.891 kb on - strand, within CA264_05030 at 1166.895 kb on + strand, within CA264_05030 at 1166.895 kb on + strand, within CA264_05030 at 1166.896 kb on - strand, within CA264_05030 at 1166.896 kb on - strand, within CA264_05030 at 1167.002 kb on - strand, within CA264_05030 at 1167.021 kb on + strand, within CA264_05030 at 1167.025 kb on + strand, within CA264_05030 at 1167.025 kb on + strand, within CA264_05030 at 1167.133 kb on + strand, within CA264_05030 at 1167.133 kb on + strand, within CA264_05030 at 1167.145 kb on + strand, within CA264_05030 at 1167.190 kb on + strand, within CA264_05030 at 1167.287 kb on + strand, within CA264_05030 at 1167.299 kb on + strand, within CA264_05030 at 1167.300 kb on - strand, within CA264_05030 at 1167.338 kb on + strand, within CA264_05030 at 1167.405 kb on - strand, within CA264_05030 at 1167.531 kb on - strand, within CA264_05030 at 1167.558 kb on + strand at 1167.591 kb on - strand at 1167.646 kb on + strand at 1167.646 kb on + strand at 1167.647 kb on - strand at 1167.651 kb on - strand at 1167.652 kb on + strand at 1167.659 kb on + strand at 1167.800 kb on + strand, within CA264_05035 at 1167.815 kb on - strand, within CA264_05035 at 1167.816 kb on + strand, within CA264_05035 at 1167.848 kb on + strand, within CA264_05035 at 1167.869 kb on + strand, within CA264_05035 at 1167.923 kb on + strand, within CA264_05035 at 1167.923 kb on + strand, within CA264_05035 at 1167.923 kb on + strand, within CA264_05035 at 1167.923 kb on + strand, within CA264_05035 at 1167.924 kb on - strand, within CA264_05035 at 1167.924 kb on - strand, within CA264_05035 at 1167.997 kb on + strand, within CA264_05035 at 1167.998 kb on - strand, within CA264_05035 at 1167.998 kb on - strand, within CA264_05035 at 1167.998 kb on - strand, within CA264_05035 at 1168.099 kb on - strand, within CA264_05035 at 1168.152 kb on - strand, within CA264_05035 at 1168.152 kb on - strand, within CA264_05035 at 1168.165 kb on - strand, within CA264_05035 at 1168.167 kb on - strand, within CA264_05035 at 1168.179 kb on + strand, within CA264_05035 at 1168.179 kb on + strand, within CA264_05035 at 1168.180 kb on - strand, within CA264_05035 at 1168.180 kb on - strand, within CA264_05035 at 1168.200 kb on - strand, within CA264_05035 at 1168.217 kb on - strand, within CA264_05035 at 1168.362 kb on - strand, within CA264_05035 at 1168.365 kb on - strand, within CA264_05035 at 1168.384 kb on + strand, within CA264_05035 at 1168.528 kb on + strand, within CA264_05035 at 1168.617 kb on + strand, within CA264_05035 at 1168.657 kb on - strand at 1168.791 kb on - strand at 1168.962 kb on + strand, within CA264_05040 at 1169.005 kb on + strand, within CA264_05040 at 1169.059 kb on - strand, within CA264_05040 at 1169.296 kb on + strand, within CA264_05040 at 1169.296 kb on + strand, within CA264_05040 at 1169.297 kb on - strand, within CA264_05040 at 1169.300 kb on + strand, within CA264_05040 at 1169.508 kb on + strand, within CA264_05040 at 1169.509 kb on - strand, within CA264_05040 at 1169.562 kb on + strand, within CA264_05040 at 1169.673 kb on + strand, within CA264_05040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 1,166,698 + CA264_05030 0.24 +0.6 1,166,760 + CA264_05030 0.29 -0.8 1,166,853 - CA264_05030 0.36 -0.2 1,166,879 - CA264_05030 0.38 +0.8 1,166,888 + CA264_05030 0.39 +0.5 1,166,888 + CA264_05030 0.39 -0.6 1,166,889 - CA264_05030 0.39 -0.2 1,166,891 - CA264_05030 0.39 +0.5 1,166,891 - CA264_05030 0.39 -1.0 1,166,895 + CA264_05030 0.39 -0.5 1,166,895 + CA264_05030 0.39 +1.2 1,166,896 - CA264_05030 0.39 -0.9 1,166,896 - CA264_05030 0.39 +0.2 1,167,002 - CA264_05030 0.47 -1.1 1,167,021 + CA264_05030 0.49 +0.0 1,167,025 + CA264_05030 0.49 +1.7 1,167,025 + CA264_05030 0.49 +0.5 1,167,133 + CA264_05030 0.58 +0.3 1,167,133 + CA264_05030 0.58 -0.6 1,167,145 + CA264_05030 0.58 -0.0 1,167,190 + CA264_05030 0.62 -0.7 1,167,287 + CA264_05030 0.69 -0.1 1,167,299 + CA264_05030 0.70 -0.4 1,167,300 - CA264_05030 0.70 -0.3 1,167,338 + CA264_05030 0.73 +0.2 1,167,405 - CA264_05030 0.79 +0.5 1,167,531 - CA264_05030 0.88 +0.7 1,167,558 + +0.2 1,167,591 - +0.2 1,167,646 + -2.6 1,167,646 + -0.4 1,167,647 - -0.4 1,167,651 - -1.8 1,167,652 + -0.2 1,167,659 + -0.8 1,167,800 + CA264_05035 0.12 +0.5 1,167,815 - CA264_05035 0.13 -1.2 1,167,816 + CA264_05035 0.14 -1.2 1,167,848 + CA264_05035 0.17 -1.1 1,167,869 + CA264_05035 0.19 -2.8 1,167,923 + CA264_05035 0.24 -0.7 1,167,923 + CA264_05035 0.24 -0.3 1,167,923 + CA264_05035 0.24 -1.0 1,167,923 + CA264_05035 0.24 +0.3 1,167,924 - CA264_05035 0.24 -1.1 1,167,924 - CA264_05035 0.24 -0.4 1,167,997 + CA264_05035 0.31 -0.4 1,167,998 - CA264_05035 0.31 -0.0 1,167,998 - CA264_05035 0.31 -0.2 1,167,998 - CA264_05035 0.31 +0.2 1,168,099 - CA264_05035 0.40 +0.6 1,168,152 - CA264_05035 0.45 +0.6 1,168,152 - CA264_05035 0.45 +0.2 1,168,165 - CA264_05035 0.47 -0.6 1,168,167 - CA264_05035 0.47 +0.0 1,168,179 + CA264_05035 0.48 -0.8 1,168,179 + CA264_05035 0.48 -0.1 1,168,180 - CA264_05035 0.48 -1.3 1,168,180 - CA264_05035 0.48 -0.8 1,168,200 - CA264_05035 0.50 +0.3 1,168,217 - CA264_05035 0.52 -0.9 1,168,362 - CA264_05035 0.65 -0.4 1,168,365 - CA264_05035 0.66 -1.4 1,168,384 + CA264_05035 0.67 -0.7 1,168,528 + CA264_05035 0.81 -1.5 1,168,617 + CA264_05035 0.89 -1.4 1,168,657 - -0.3 1,168,791 - -1.0 1,168,962 + CA264_05040 0.14 +0.2 1,169,005 + CA264_05040 0.18 -0.2 1,169,059 - CA264_05040 0.23 +0.0 1,169,296 + CA264_05040 0.44 -0.1 1,169,296 + CA264_05040 0.44 +1.7 1,169,297 - CA264_05040 0.45 +0.2 1,169,300 + CA264_05040 0.45 -0.1 1,169,508 + CA264_05040 0.64 +0.6 1,169,509 - CA264_05040 0.64 +0.3 1,169,562 + CA264_05040 0.69 -0.6 1,169,673 + CA264_05040 0.79 -0.7
Or see this region's nucleotide sequence