Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04885

Experiment: m.b. D-Cycloserine 0.032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04880 and CA264_04885 are separated by 191 nucleotidesCA264_04885 and CA264_04890 are separated by 149 nucleotides CA264_04880: CA264_04880 - polyribonucleotide nucleotidyltransferase, at 1,131,441 to 1,133,579 _04880 CA264_04885: CA264_04885 - RNA polymerase subunit sigma, at 1,133,771 to 1,134,634 _04885 CA264_04890: CA264_04890 - thioredoxin-disulfide reductase, at 1,134,784 to 1,135,722 _04890 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -2 -1 0 1at 1133.341 kb on - strand, within CA264_04880at 1133.641 kb on - strandat 1133.678 kb on - strandat 1133.678 kb on - strandat 1134.632 kb on + strandat 1134.693 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
remove
1,133,341 - CA264_04880 0.89 -1.8
1,133,641 - -0.2
1,133,678 - +1.5
1,133,678 - +0.8
1,134,632 + -0.0
1,134,693 + -1.1

Or see this region's nucleotide sequence