Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04460

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04455 and CA264_04460 are separated by 97 nucleotidesCA264_04460 and CA264_04465 are separated by 89 nucleotides CA264_04455: CA264_04455 - hypothetical protein, at 1,030,457 to 1,031,698 _04455 CA264_04460: CA264_04460 - ABC transporter, at 1,031,796 to 1,032,272 _04460 CA264_04465: CA264_04465 - alpha/beta hydrolase, at 1,032,362 to 1,033,198 _04465 Position (kb) 1031 1032 1033Strain fitness (log2 ratio) -2 -1 0 1at 1030.802 kb on + strand, within CA264_04455at 1030.802 kb on + strand, within CA264_04455at 1030.802 kb on + strand, within CA264_04455at 1030.802 kb on + strand, within CA264_04455at 1030.802 kb on + strand, within CA264_04455at 1030.803 kb on - strand, within CA264_04455at 1030.803 kb on - strand, within CA264_04455at 1030.803 kb on - strand, within CA264_04455at 1030.809 kb on - strand, within CA264_04455at 1030.879 kb on + strand, within CA264_04455at 1030.974 kb on - strand, within CA264_04455at 1030.979 kb on - strand, within CA264_04455at 1030.979 kb on - strand, within CA264_04455at 1030.993 kb on - strand, within CA264_04455at 1031.009 kb on + strand, within CA264_04455at 1031.040 kb on + strand, within CA264_04455at 1031.040 kb on + strand, within CA264_04455at 1031.041 kb on - strand, within CA264_04455at 1031.131 kb on + strand, within CA264_04455at 1031.215 kb on - strand, within CA264_04455at 1031.221 kb on + strand, within CA264_04455at 1031.222 kb on - strand, within CA264_04455at 1031.310 kb on - strand, within CA264_04455at 1031.312 kb on + strand, within CA264_04455at 1031.312 kb on + strandat 1031.340 kb on - strand, within CA264_04455at 1031.379 kb on - strand, within CA264_04455at 1031.402 kb on - strand, within CA264_04455at 1031.540 kb on - strand, within CA264_04455at 1031.616 kb on - strandat 1031.798 kb on - strandat 1031.798 kb on - strandat 1031.829 kb on + strandat 1032.062 kb on + strand, within CA264_04460at 1032.063 kb on - strand, within CA264_04460at 1032.065 kb on - strand, within CA264_04460at 1032.231 kb on - strandat 1032.237 kb on + strandat 1032.252 kb on + strandat 1032.253 kb on - strandat 1032.279 kb on + strandat 1032.284 kb on + strandat 1032.289 kb on - strandat 1032.359 kb on + strandat 1032.360 kb on - strandat 1032.363 kb on + strandat 1032.363 kb on + strandat 1032.364 kb on - strandat 1032.364 kb on - strandat 1032.406 kb on + strandat 1032.406 kb on + strandat 1032.407 kb on - strandat 1032.450 kb on + strand, within CA264_04465at 1032.527 kb on + strand, within CA264_04465at 1032.527 kb on + strand, within CA264_04465at 1032.527 kb on + strand, within CA264_04465at 1032.527 kb on + strand, within CA264_04465at 1032.527 kb on + strand, within CA264_04465at 1032.527 kb on + strand, within CA264_04465at 1032.528 kb on - strand, within CA264_04465at 1032.528 kb on - strand, within CA264_04465at 1032.528 kb on - strand, within CA264_04465at 1032.530 kb on - strand, within CA264_04465at 1032.549 kb on - strand, within CA264_04465at 1032.646 kb on - strand, within CA264_04465at 1032.666 kb on - strand, within CA264_04465at 1032.688 kb on - strand, within CA264_04465at 1032.694 kb on - strand, within CA264_04465at 1032.873 kb on + strand, within CA264_04465at 1032.874 kb on - strand, within CA264_04465at 1032.874 kb on - strand, within CA264_04465at 1032.942 kb on - strand, within CA264_04465at 1032.975 kb on + strand, within CA264_04465at 1032.976 kb on - strand, within CA264_04465at 1032.976 kb on - strand, within CA264_04465at 1032.981 kb on + strand, within CA264_04465at 1032.987 kb on + strand, within CA264_04465at 1033.082 kb on - strand, within CA264_04465at 1033.144 kb on - strandat 1033.152 kb on + strandat 1033.204 kb on - strandat 1033.223 kb on + strandat 1033.223 kb on + strandat 1033.224 kb on - strandat 1033.226 kb on - strandat 1033.239 kb on + strandat 1033.239 kb on + strandat 1033.240 kb on - strandat 1033.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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1,030,802 + CA264_04455 0.28 -0.2
1,030,802 + CA264_04455 0.28 -0.4
1,030,802 + CA264_04455 0.28 +0.5
1,030,802 + CA264_04455 0.28 +0.1
1,030,802 + CA264_04455 0.28 +0.3
1,030,803 - CA264_04455 0.28 -1.5
1,030,803 - CA264_04455 0.28 +0.4
1,030,803 - CA264_04455 0.28 -1.0
1,030,809 - CA264_04455 0.28 +0.7
1,030,879 + CA264_04455 0.34 +1.6
1,030,974 - CA264_04455 0.42 +1.5
1,030,979 - CA264_04455 0.42 +0.0
1,030,979 - CA264_04455 0.42 -0.3
1,030,993 - CA264_04455 0.43 +0.3
1,031,009 + CA264_04455 0.44 +1.0
1,031,040 + CA264_04455 0.47 +0.7
1,031,040 + CA264_04455 0.47 +0.2
1,031,041 - CA264_04455 0.47 +0.3
1,031,131 + CA264_04455 0.54 +0.7
1,031,215 - CA264_04455 0.61 -0.3
1,031,221 + CA264_04455 0.62 -0.6
1,031,222 - CA264_04455 0.62 +0.4
1,031,310 - CA264_04455 0.69 +0.2
1,031,312 + CA264_04455 0.69 -1.3
1,031,312 + +1.7
1,031,340 - CA264_04455 0.71 +0.3
1,031,379 - CA264_04455 0.74 -0.9
1,031,402 - CA264_04455 0.76 +0.3
1,031,540 - CA264_04455 0.87 -0.7
1,031,616 - -1.1
1,031,798 - -0.8
1,031,798 - +0.1
1,031,829 + +0.6
1,032,062 + CA264_04460 0.56 +0.9
1,032,063 - CA264_04460 0.56 -0.4
1,032,065 - CA264_04460 0.56 +1.0
1,032,231 - +1.6
1,032,237 + +1.2
1,032,252 + +0.1
1,032,253 - +0.1
1,032,279 + -1.5
1,032,284 + -2.2
1,032,289 - -0.2
1,032,359 + -0.0
1,032,360 - +0.1
1,032,363 + +0.4
1,032,363 + -0.3
1,032,364 - -0.6
1,032,364 - -0.5
1,032,406 + -1.3
1,032,406 + -0.6
1,032,407 - -1.7
1,032,450 + CA264_04465 0.11 -0.2
1,032,527 + CA264_04465 0.20 +0.5
1,032,527 + CA264_04465 0.20 -0.8
1,032,527 + CA264_04465 0.20 -0.1
1,032,527 + CA264_04465 0.20 -0.0
1,032,527 + CA264_04465 0.20 -0.2
1,032,527 + CA264_04465 0.20 -0.5
1,032,528 - CA264_04465 0.20 -0.0
1,032,528 - CA264_04465 0.20 -0.2
1,032,528 - CA264_04465 0.20 -0.3
1,032,530 - CA264_04465 0.20 -0.8
1,032,549 - CA264_04465 0.22 -0.8
1,032,646 - CA264_04465 0.34 +1.2
1,032,666 - CA264_04465 0.36 +0.3
1,032,688 - CA264_04465 0.39 -0.8
1,032,694 - CA264_04465 0.40 +0.8
1,032,873 + CA264_04465 0.61 -1.2
1,032,874 - CA264_04465 0.61 -0.8
1,032,874 - CA264_04465 0.61 -0.5
1,032,942 - CA264_04465 0.69 -0.4
1,032,975 + CA264_04465 0.73 -0.7
1,032,976 - CA264_04465 0.73 +0.9
1,032,976 - CA264_04465 0.73 -0.2
1,032,981 + CA264_04465 0.74 -0.0
1,032,987 + CA264_04465 0.75 +1.1
1,033,082 - CA264_04465 0.86 -0.8
1,033,144 - +1.3
1,033,152 + -0.1
1,033,204 - -0.4
1,033,223 + +0.4
1,033,223 + -0.8
1,033,224 - -0.3
1,033,226 - +1.0
1,033,239 + -1.0
1,033,239 + -0.6
1,033,240 - -0.4
1,033,272 + +0.0

Or see this region's nucleotide sequence