Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04265 and CA264_04270 are separated by 53 nucleotides CA264_04270 and CA264_04275 are separated by 64 nucleotides CA264_04275 and CA264_04280 are separated by 609 nucleotides
CA264_04265: CA264_04265 - NADH-quinone oxidoreductase subunit B, at 986,482 to 987,120
_04265
CA264_04270: CA264_04270 - NADH:ubiquinone oxidoreductase subunit A, at 987,174 to 987,605
_04270
CA264_04275: CA264_04275 - histidine kinase, at 987,670 to 988,101
_04275
CA264_04280: CA264_04280 - hypothetical protein, at 988,711 to 989,112
_04280
Position (kb)
987
988
989 Strain fitness (log2 ratio)
-2
-1
0
1 at 986.684 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.729 kb on + strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.730 kb on - strand, within CA264_04265 at 986.734 kb on - strand, within CA264_04265 at 986.832 kb on + strand, within CA264_04265 at 986.887 kb on + strand, within CA264_04265 at 986.919 kb on - strand, within CA264_04265 at 987.059 kb on + strand at 987.135 kb on - strand at 987.146 kb on - strand at 987.164 kb on - strand at 987.164 kb on - strand at 987.164 kb on - strand at 987.166 kb on - strand at 987.166 kb on - strand at 987.168 kb on + strand at 987.168 kb on + strand at 987.169 kb on - strand at 987.206 kb on - strand at 987.265 kb on + strand, within CA264_04270 at 987.266 kb on - strand, within CA264_04270 at 987.266 kb on - strand, within CA264_04270 at 987.406 kb on + strand, within CA264_04270 at 987.508 kb on + strand, within CA264_04270 at 987.508 kb on + strand, within CA264_04270 at 987.509 kb on - strand, within CA264_04270 at 987.594 kb on + strand at 987.594 kb on + strand at 987.628 kb on - strand at 987.684 kb on + strand at 987.684 kb on + strand at 987.685 kb on - strand at 987.686 kb on + strand at 987.687 kb on - strand at 987.731 kb on + strand, within CA264_04275 at 987.731 kb on + strand, within CA264_04275 at 987.732 kb on - strand, within CA264_04275 at 987.748 kb on + strand, within CA264_04275 at 987.748 kb on + strand, within CA264_04275 at 987.749 kb on - strand, within CA264_04275 at 987.750 kb on + strand, within CA264_04275 at 987.757 kb on + strand, within CA264_04275 at 987.758 kb on - strand, within CA264_04275 at 987.826 kb on - strand, within CA264_04275 at 987.985 kb on + strand, within CA264_04275 at 988.028 kb on + strand, within CA264_04275 at 988.029 kb on - strand, within CA264_04275 at 988.210 kb on + strand at 988.250 kb on + strand at 988.307 kb on + strand at 988.342 kb on + strand at 988.343 kb on - strand at 988.343 kb on - strand at 988.344 kb on + strand at 988.345 kb on - strand at 988.348 kb on + strand at 988.348 kb on + strand at 988.349 kb on - strand at 988.391 kb on - strand at 988.448 kb on - strand at 988.451 kb on + strand at 988.468 kb on - strand at 988.468 kb on - strand at 988.529 kb on + strand at 988.530 kb on - strand at 988.532 kb on + strand at 988.564 kb on - strand at 988.615 kb on + strand at 988.620 kb on + strand at 988.620 kb on + strand at 988.620 kb on + strand at 988.627 kb on + strand at 988.629 kb on + strand at 988.629 kb on + strand at 988.630 kb on - strand at 988.630 kb on - strand at 988.630 kb on - strand at 988.630 kb on - strand at 988.656 kb on + strand at 988.657 kb on - strand at 988.663 kb on - strand at 988.672 kb on - strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.674 kb on + strand at 988.681 kb on + strand at 988.681 kb on + strand at 988.682 kb on - strand at 988.683 kb on + strand at 988.683 kb on + strand at 988.684 kb on - strand at 988.684 kb on - strand at 988.684 kb on - strand at 988.686 kb on + strand at 988.687 kb on - strand at 988.693 kb on + strand at 988.706 kb on + strand at 988.707 kb on - strand at 988.707 kb on - strand at 988.711 kb on - strand at 988.842 kb on + strand, within CA264_04280 at 989.090 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 986,684 + CA264_04265 0.32 +1.4 986,729 + CA264_04265 0.39 +1.3 986,729 + CA264_04265 0.39 +0.1 986,729 + CA264_04265 0.39 +1.6 986,729 + CA264_04265 0.39 -1.9 986,729 + CA264_04265 0.39 -0.6 986,729 + CA264_04265 0.39 -0.1 986,730 - CA264_04265 0.39 -0.2 986,730 - CA264_04265 0.39 -1.1 986,730 - CA264_04265 0.39 +0.6 986,730 - CA264_04265 0.39 -0.2 986,730 - CA264_04265 0.39 -0.2 986,734 - CA264_04265 0.39 -0.1 986,832 + CA264_04265 0.55 +0.8 986,887 + CA264_04265 0.63 -0.7 986,919 - CA264_04265 0.68 -0.1 987,059 + +0.7 987,135 - -0.1 987,146 - -0.6 987,164 - -1.3 987,164 - -0.3 987,164 - -0.0 987,166 - -0.3 987,166 - -0.1 987,168 + +0.6 987,168 + -0.4 987,169 - -0.2 987,206 - -0.5 987,265 + CA264_04270 0.21 -0.9 987,266 - CA264_04270 0.21 -0.7 987,266 - CA264_04270 0.21 -0.5 987,406 + CA264_04270 0.54 -0.1 987,508 + CA264_04270 0.77 -0.5 987,508 + CA264_04270 0.77 +0.0 987,509 - CA264_04270 0.78 +0.1 987,594 + +0.0 987,594 + +0.7 987,628 - -0.8 987,684 + +1.1 987,684 + +0.3 987,685 - +0.2 987,686 + -0.0 987,687 - +1.1 987,731 + CA264_04275 0.14 -0.4 987,731 + CA264_04275 0.14 -0.0 987,732 - CA264_04275 0.14 +0.5 987,748 + CA264_04275 0.18 +1.5 987,748 + CA264_04275 0.18 -0.2 987,749 - CA264_04275 0.18 +1.0 987,750 + CA264_04275 0.19 +0.0 987,757 + CA264_04275 0.20 -0.4 987,758 - CA264_04275 0.20 +0.7 987,826 - CA264_04275 0.36 -0.0 987,985 + CA264_04275 0.73 +1.2 988,028 + CA264_04275 0.83 -0.3 988,029 - CA264_04275 0.83 -1.8 988,210 + +0.7 988,250 + -0.2 988,307 + +0.0 988,342 + +0.3 988,343 - +0.1 988,343 - -0.9 988,344 + -0.4 988,345 - +0.7 988,348 + -0.3 988,348 + +0.7 988,349 - -0.2 988,391 - -1.2 988,448 - +0.4 988,451 + +1.4 988,468 - -0.2 988,468 - +0.2 988,529 + -1.0 988,530 - -0.5 988,532 + -0.1 988,564 - +0.6 988,615 + +0.0 988,620 + +0.7 988,620 + -0.1 988,620 + +0.1 988,627 + +0.1 988,629 + -0.1 988,629 + -0.0 988,630 - +0.0 988,630 - -0.3 988,630 - +0.2 988,630 - -0.5 988,656 + -0.1 988,657 - +0.3 988,663 - -0.4 988,672 - +0.1 988,674 + +0.2 988,674 + -0.2 988,674 + +0.1 988,674 + -0.3 988,681 + -0.3 988,681 + -0.1 988,682 - -0.8 988,683 + -0.2 988,683 + +0.6 988,684 - +0.0 988,684 - +0.3 988,684 - +0.1 988,686 + -0.1 988,687 - +0.2 988,693 + +0.2 988,706 + -0.3 988,707 - -0.5 988,707 - +0.6 988,711 - +0.3 988,842 + CA264_04280 0.33 -1.6 989,090 - +0.7
Or see this region's nucleotide sequence