Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04275

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04265 and CA264_04270 are separated by 53 nucleotidesCA264_04270 and CA264_04275 are separated by 64 nucleotidesCA264_04275 and CA264_04280 are separated by 609 nucleotides CA264_04265: CA264_04265 - NADH-quinone oxidoreductase subunit B, at 986,482 to 987,120 _04265 CA264_04270: CA264_04270 - NADH:ubiquinone oxidoreductase subunit A, at 987,174 to 987,605 _04270 CA264_04275: CA264_04275 - histidine kinase, at 987,670 to 988,101 _04275 CA264_04280: CA264_04280 - hypothetical protein, at 988,711 to 989,112 _04280 Position (kb) 987 988 989Strain fitness (log2 ratio) -2 -1 0 1at 986.684 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.729 kb on + strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.730 kb on - strand, within CA264_04265at 986.734 kb on - strand, within CA264_04265at 986.832 kb on + strand, within CA264_04265at 986.887 kb on + strand, within CA264_04265at 986.919 kb on - strand, within CA264_04265at 987.059 kb on + strandat 987.135 kb on - strandat 987.146 kb on - strandat 987.164 kb on - strandat 987.164 kb on - strandat 987.164 kb on - strandat 987.166 kb on - strandat 987.166 kb on - strandat 987.168 kb on + strandat 987.168 kb on + strandat 987.169 kb on - strandat 987.206 kb on - strandat 987.265 kb on + strand, within CA264_04270at 987.266 kb on - strand, within CA264_04270at 987.266 kb on - strand, within CA264_04270at 987.406 kb on + strand, within CA264_04270at 987.508 kb on + strand, within CA264_04270at 987.508 kb on + strand, within CA264_04270at 987.509 kb on - strand, within CA264_04270at 987.594 kb on + strandat 987.594 kb on + strandat 987.628 kb on - strandat 987.684 kb on + strandat 987.684 kb on + strandat 987.685 kb on - strandat 987.686 kb on + strandat 987.687 kb on - strandat 987.731 kb on + strand, within CA264_04275at 987.731 kb on + strand, within CA264_04275at 987.732 kb on - strand, within CA264_04275at 987.748 kb on + strand, within CA264_04275at 987.748 kb on + strand, within CA264_04275at 987.749 kb on - strand, within CA264_04275at 987.750 kb on + strand, within CA264_04275at 987.757 kb on + strand, within CA264_04275at 987.758 kb on - strand, within CA264_04275at 987.826 kb on - strand, within CA264_04275at 987.985 kb on + strand, within CA264_04275at 988.028 kb on + strand, within CA264_04275at 988.029 kb on - strand, within CA264_04275at 988.210 kb on + strandat 988.250 kb on + strandat 988.307 kb on + strandat 988.342 kb on + strandat 988.343 kb on - strandat 988.343 kb on - strandat 988.344 kb on + strandat 988.345 kb on - strandat 988.348 kb on + strandat 988.348 kb on + strandat 988.349 kb on - strandat 988.391 kb on - strandat 988.448 kb on - strandat 988.451 kb on + strandat 988.468 kb on - strandat 988.468 kb on - strandat 988.529 kb on + strandat 988.530 kb on - strandat 988.532 kb on + strandat 988.564 kb on - strandat 988.615 kb on + strandat 988.620 kb on + strandat 988.620 kb on + strandat 988.620 kb on + strandat 988.627 kb on + strandat 988.629 kb on + strandat 988.629 kb on + strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.630 kb on - strandat 988.656 kb on + strandat 988.657 kb on - strandat 988.663 kb on - strandat 988.672 kb on - strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.674 kb on + strandat 988.681 kb on + strandat 988.681 kb on + strandat 988.682 kb on - strandat 988.683 kb on + strandat 988.683 kb on + strandat 988.684 kb on - strandat 988.684 kb on - strandat 988.684 kb on - strandat 988.686 kb on + strandat 988.687 kb on - strandat 988.693 kb on + strandat 988.706 kb on + strandat 988.707 kb on - strandat 988.707 kb on - strandat 988.711 kb on - strandat 988.842 kb on + strand, within CA264_04280at 989.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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986,684 + CA264_04265 0.32 +1.4
986,729 + CA264_04265 0.39 +1.3
986,729 + CA264_04265 0.39 +0.1
986,729 + CA264_04265 0.39 +1.6
986,729 + CA264_04265 0.39 -1.9
986,729 + CA264_04265 0.39 -0.6
986,729 + CA264_04265 0.39 -0.1
986,730 - CA264_04265 0.39 -0.2
986,730 - CA264_04265 0.39 -1.1
986,730 - CA264_04265 0.39 +0.6
986,730 - CA264_04265 0.39 -0.2
986,730 - CA264_04265 0.39 -0.2
986,734 - CA264_04265 0.39 -0.1
986,832 + CA264_04265 0.55 +0.8
986,887 + CA264_04265 0.63 -0.7
986,919 - CA264_04265 0.68 -0.1
987,059 + +0.7
987,135 - -0.1
987,146 - -0.6
987,164 - -1.3
987,164 - -0.3
987,164 - -0.0
987,166 - -0.3
987,166 - -0.1
987,168 + +0.6
987,168 + -0.4
987,169 - -0.2
987,206 - -0.5
987,265 + CA264_04270 0.21 -0.9
987,266 - CA264_04270 0.21 -0.7
987,266 - CA264_04270 0.21 -0.5
987,406 + CA264_04270 0.54 -0.1
987,508 + CA264_04270 0.77 -0.5
987,508 + CA264_04270 0.77 +0.0
987,509 - CA264_04270 0.78 +0.1
987,594 + +0.0
987,594 + +0.7
987,628 - -0.8
987,684 + +1.1
987,684 + +0.3
987,685 - +0.2
987,686 + -0.0
987,687 - +1.1
987,731 + CA264_04275 0.14 -0.4
987,731 + CA264_04275 0.14 -0.0
987,732 - CA264_04275 0.14 +0.5
987,748 + CA264_04275 0.18 +1.5
987,748 + CA264_04275 0.18 -0.2
987,749 - CA264_04275 0.18 +1.0
987,750 + CA264_04275 0.19 +0.0
987,757 + CA264_04275 0.20 -0.4
987,758 - CA264_04275 0.20 +0.7
987,826 - CA264_04275 0.36 -0.0
987,985 + CA264_04275 0.73 +1.2
988,028 + CA264_04275 0.83 -0.3
988,029 - CA264_04275 0.83 -1.8
988,210 + +0.7
988,250 + -0.2
988,307 + +0.0
988,342 + +0.3
988,343 - +0.1
988,343 - -0.9
988,344 + -0.4
988,345 - +0.7
988,348 + -0.3
988,348 + +0.7
988,349 - -0.2
988,391 - -1.2
988,448 - +0.4
988,451 + +1.4
988,468 - -0.2
988,468 - +0.2
988,529 + -1.0
988,530 - -0.5
988,532 + -0.1
988,564 - +0.6
988,615 + +0.0
988,620 + +0.7
988,620 + -0.1
988,620 + +0.1
988,627 + +0.1
988,629 + -0.1
988,629 + -0.0
988,630 - +0.0
988,630 - -0.3
988,630 - +0.2
988,630 - -0.5
988,656 + -0.1
988,657 - +0.3
988,663 - -0.4
988,672 - +0.1
988,674 + +0.2
988,674 + -0.2
988,674 + +0.1
988,674 + -0.3
988,681 + -0.3
988,681 + -0.1
988,682 - -0.8
988,683 + -0.2
988,683 + +0.6
988,684 - +0.0
988,684 - +0.3
988,684 - +0.1
988,686 + -0.1
988,687 - +0.2
988,693 + +0.2
988,706 + -0.3
988,707 - -0.5
988,707 - +0.6
988,711 - +0.3
988,842 + CA264_04280 0.33 -1.6
989,090 - +0.7

Or see this region's nucleotide sequence