Experiment: m.b. D-Cycloserine 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03710 and CA264_03715 are separated by 234 nucleotides CA264_03715 and CA264_03720 are separated by 165 nucleotides
CA264_03710: CA264_03710 - AraC family transcriptional regulator, at 869,843 to 870,721
_03710
CA264_03715: CA264_03715 - DUF983 domain-containing protein, at 870,956 to 871,285
_03715
CA264_03720: CA264_03720 - ABC transporter, at 871,451 to 872,368
_03720
Position (kb) 870
871
872 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 870.003 kb on + strand, within CA264_03710 at 870.008 kb on + strand, within CA264_03710 at 870.009 kb on - strand, within CA264_03710 at 870.009 kb on - strand, within CA264_03710 at 870.077 kb on + strand, within CA264_03710 at 870.088 kb on + strand, within CA264_03710 at 870.091 kb on - strand, within CA264_03710 at 870.218 kb on - strand, within CA264_03710 at 870.306 kb on - strand, within CA264_03710 at 870.522 kb on + strand, within CA264_03710 at 870.522 kb on + strand, within CA264_03710 at 870.564 kb on - strand, within CA264_03710 at 870.564 kb on - strand, within CA264_03710 at 870.579 kb on + strand, within CA264_03710 at 870.643 kb on + strand at 870.644 kb on - strand at 870.648 kb on + strand at 870.648 kb on + strand at 870.655 kb on - strand at 870.696 kb on + strand at 870.721 kb on + strand at 870.722 kb on - strand at 870.745 kb on + strand at 870.746 kb on - strand at 870.754 kb on - strand at 870.808 kb on + strand at 870.813 kb on + strand at 870.814 kb on - strand at 870.815 kb on + strand at 870.844 kb on - strand at 870.857 kb on - strand at 870.907 kb on - strand at 870.907 kb on - strand at 870.910 kb on - strand at 870.929 kb on - strand at 870.974 kb on + strand at 870.975 kb on - strand at 870.975 kb on - strand at 871.049 kb on + strand, within CA264_03715 at 871.049 kb on + strand, within CA264_03715 at 871.052 kb on + strand, within CA264_03715 at 871.065 kb on - strand, within CA264_03715 at 871.099 kb on - strand, within CA264_03715 at 871.112 kb on - strand, within CA264_03715 at 871.112 kb on - strand, within CA264_03715 at 871.114 kb on - strand, within CA264_03715 at 871.138 kb on + strand, within CA264_03715 at 871.138 kb on + strand, within CA264_03715 at 871.139 kb on - strand, within CA264_03715 at 871.139 kb on - strand, within CA264_03715 at 871.229 kb on - strand, within CA264_03715 at 871.229 kb on - strand, within CA264_03715 at 871.230 kb on + strand, within CA264_03715 at 871.230 kb on + strand, within CA264_03715 at 871.241 kb on + strand, within CA264_03715 at 871.268 kb on - strand at 871.283 kb on + strand at 871.284 kb on - strand at 871.284 kb on - strand at 871.288 kb on + strand at 871.297 kb on - strand at 871.305 kb on + strand at 871.306 kb on - strand at 871.311 kb on + strand at 871.375 kb on + strand at 871.462 kb on + strand at 871.462 kb on + strand at 871.514 kb on + strand at 871.663 kb on - strand, within CA264_03720 at 871.672 kb on + strand, within CA264_03720 at 871.697 kb on + strand, within CA264_03720 at 871.703 kb on - strand, within CA264_03720 at 871.798 kb on - strand, within CA264_03720 at 871.798 kb on - strand, within CA264_03720 at 871.810 kb on + strand, within CA264_03720 at 871.817 kb on + strand, within CA264_03720 at 871.874 kb on - strand, within CA264_03720 at 871.874 kb on - strand, within CA264_03720 at 871.878 kb on + strand, within CA264_03720 at 871.878 kb on + strand, within CA264_03720 at 871.878 kb on + strand, within CA264_03720 at 871.879 kb on - strand, within CA264_03720 at 871.879 kb on - strand, within CA264_03720 at 871.911 kb on - strand, within CA264_03720 at 871.968 kb on - strand, within CA264_03720 at 872.031 kb on - strand, within CA264_03720 at 872.040 kb on + strand, within CA264_03720 at 872.040 kb on + strand, within CA264_03720 at 872.175 kb on + strand, within CA264_03720 at 872.176 kb on - strand, within CA264_03720 at 872.217 kb on + strand, within CA264_03720 at 872.217 kb on + strand, within CA264_03720 at 872.218 kb on - strand, within CA264_03720 at 872.218 kb on - strand, within CA264_03720 at 872.218 kb on - strand, within CA264_03720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml remove 870,003 + CA264_03710 0.18 +0.1 870,008 + CA264_03710 0.19 +1.1 870,009 - CA264_03710 0.19 -0.8 870,009 - CA264_03710 0.19 +3.4 870,077 + CA264_03710 0.27 +1.4 870,088 + CA264_03710 0.28 -0.3 870,091 - CA264_03710 0.28 -0.8 870,218 - CA264_03710 0.43 -1.8 870,306 - CA264_03710 0.53 -0.5 870,522 + CA264_03710 0.77 -0.6 870,522 + CA264_03710 0.77 +0.1 870,564 - CA264_03710 0.82 -0.0 870,564 - CA264_03710 0.82 -1.3 870,579 + CA264_03710 0.84 -0.2 870,643 + -0.5 870,644 - -0.7 870,648 + -0.8 870,648 + -0.2 870,655 - +0.4 870,696 + -0.5 870,721 + -0.6 870,722 - -1.3 870,745 + -1.5 870,746 - +0.3 870,754 - -0.2 870,808 + +0.3 870,813 + +0.4 870,814 - -0.1 870,815 + -1.5 870,844 - +0.5 870,857 - -0.6 870,907 - -2.2 870,907 - -2.0 870,910 - -1.7 870,929 - -2.8 870,974 + -4.0 870,975 - -2.7 870,975 - -1.3 871,049 + CA264_03715 0.28 -2.0 871,049 + CA264_03715 0.28 -3.3 871,052 + CA264_03715 0.29 -1.0 871,065 - CA264_03715 0.33 -1.6 871,099 - CA264_03715 0.43 -1.7 871,112 - CA264_03715 0.47 -1.9 871,112 - CA264_03715 0.47 -2.7 871,114 - CA264_03715 0.48 -3.3 871,138 + CA264_03715 0.55 -3.5 871,138 + CA264_03715 0.55 -2.9 871,139 - CA264_03715 0.55 -3.5 871,139 - CA264_03715 0.55 +0.1 871,229 - CA264_03715 0.83 -1.2 871,229 - CA264_03715 0.83 -1.5 871,230 + CA264_03715 0.83 -1.0 871,230 + CA264_03715 0.83 -1.1 871,241 + CA264_03715 0.86 -0.2 871,268 - -2.0 871,283 + +0.5 871,284 - -0.5 871,284 - +1.0 871,288 + -1.1 871,297 - +0.4 871,305 + -0.3 871,306 - -0.5 871,311 + -0.2 871,375 + -0.2 871,462 + -0.1 871,462 + -0.3 871,514 + -1.7 871,663 - CA264_03720 0.23 +0.1 871,672 + CA264_03720 0.24 +0.3 871,697 + CA264_03720 0.27 -0.6 871,703 - CA264_03720 0.27 +0.1 871,798 - CA264_03720 0.38 +0.5 871,798 - CA264_03720 0.38 +0.3 871,810 + CA264_03720 0.39 -0.6 871,817 + CA264_03720 0.40 +0.1 871,874 - CA264_03720 0.46 +0.0 871,874 - CA264_03720 0.46 -0.8 871,878 + CA264_03720 0.47 -0.2 871,878 + CA264_03720 0.47 +0.4 871,878 + CA264_03720 0.47 +0.1 871,879 - CA264_03720 0.47 -0.3 871,879 - CA264_03720 0.47 +0.3 871,911 - CA264_03720 0.50 -1.3 871,968 - CA264_03720 0.56 -1.2 872,031 - CA264_03720 0.63 +0.2 872,040 + CA264_03720 0.64 +0.4 872,040 + CA264_03720 0.64 -0.7 872,175 + CA264_03720 0.79 -1.4 872,176 - CA264_03720 0.79 -0.5 872,217 + CA264_03720 0.83 +0.2 872,217 + CA264_03720 0.83 -0.8 872,218 - CA264_03720 0.84 -0.2 872,218 - CA264_03720 0.84 -0.4 872,218 - CA264_03720 0.84 +0.8
Or see this region's nucleotide sequence