Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03070

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03065 and CA264_03070 are separated by 20 nucleotidesCA264_03070 and CA264_03075 are separated by 10 nucleotides CA264_03065: CA264_03065 - hypothetical protein, at 713,745 to 715,061 _03065 CA264_03070: CA264_03070 - group 1 glycosyl transferase, at 715,082 to 716,287 _03070 CA264_03075: CA264_03075 - lipopolysaccharide biosynthesis protein, at 716,298 to 717,845 _03075 Position (kb) 715 716 717Strain fitness (log2 ratio) -2 -1 0 1at 714.208 kb on + strand, within CA264_03065at 714.227 kb on - strand, within CA264_03065at 714.365 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.424 kb on + strand, within CA264_03065at 714.425 kb on - strand, within CA264_03065at 714.425 kb on - strand, within CA264_03065at 714.425 kb on - strand, within CA264_03065at 714.447 kb on - strand, within CA264_03065at 714.456 kb on + strand, within CA264_03065at 714.456 kb on + strand, within CA264_03065at 714.517 kb on + strand, within CA264_03065at 714.518 kb on - strand, within CA264_03065at 714.518 kb on - strand, within CA264_03065at 714.577 kb on + strand, within CA264_03065at 714.578 kb on - strand, within CA264_03065at 714.584 kb on + strand, within CA264_03065at 714.585 kb on - strand, within CA264_03065at 714.678 kb on + strand, within CA264_03065at 714.679 kb on - strand, within CA264_03065at 714.679 kb on - strand, within CA264_03065at 714.689 kb on + strand, within CA264_03065at 714.752 kb on - strand, within CA264_03065at 714.790 kb on - strand, within CA264_03065at 714.803 kb on - strand, within CA264_03065at 714.809 kb on - strand, within CA264_03065at 714.811 kb on + strand, within CA264_03065at 714.812 kb on - strand, within CA264_03065at 714.905 kb on - strand, within CA264_03065at 714.972 kb on - strandat 715.038 kb on + strandat 715.038 kb on + strandat 715.049 kb on - strandat 715.053 kb on + strandat 715.053 kb on + strandat 715.054 kb on - strandat 715.054 kb on - strandat 715.090 kb on + strandat 715.099 kb on - strandat 715.126 kb on + strandat 715.127 kb on - strandat 715.135 kb on - strandat 715.138 kb on + strandat 715.139 kb on - strandat 715.139 kb on - strandat 715.139 kb on - strandat 715.145 kb on + strandat 715.167 kb on - strandat 715.234 kb on + strand, within CA264_03070at 715.250 kb on + strand, within CA264_03070at 715.286 kb on - strand, within CA264_03070at 715.292 kb on - strand, within CA264_03070at 715.292 kb on - strand, within CA264_03070at 715.341 kb on - strand, within CA264_03070at 715.399 kb on + strand, within CA264_03070at 715.400 kb on - strand, within CA264_03070at 715.477 kb on + strand, within CA264_03070at 715.477 kb on + strand, within CA264_03070at 715.574 kb on + strand, within CA264_03070at 715.575 kb on - strand, within CA264_03070at 715.575 kb on - strand, within CA264_03070at 715.583 kb on + strand, within CA264_03070at 715.685 kb on + strand, within CA264_03070at 715.685 kb on + strand, within CA264_03070at 715.690 kb on - strand, within CA264_03070at 715.747 kb on + strand, within CA264_03070at 715.799 kb on - strand, within CA264_03070at 715.799 kb on - strand, within CA264_03070at 715.857 kb on + strand, within CA264_03070at 715.901 kb on - strand, within CA264_03070at 715.916 kb on + strand, within CA264_03070at 715.968 kb on + strand, within CA264_03070at 715.968 kb on + strand, within CA264_03070at 715.969 kb on - strand, within CA264_03070at 715.969 kb on - strand, within CA264_03070at 715.978 kb on - strand, within CA264_03070at 715.983 kb on + strand, within CA264_03070at 715.983 kb on + strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 715.984 kb on - strand, within CA264_03070at 716.010 kb on - strand, within CA264_03070at 716.015 kb on - strand, within CA264_03070at 716.090 kb on + strand, within CA264_03070at 716.090 kb on + strand, within CA264_03070at 716.105 kb on + strand, within CA264_03070at 716.142 kb on + strand, within CA264_03070at 716.151 kb on - strand, within CA264_03070at 716.168 kb on + strandat 716.169 kb on - strandat 716.170 kb on + strandat 716.170 kb on + strandat 716.171 kb on - strandat 716.171 kb on - strandat 716.257 kb on + strandat 716.257 kb on + strandat 716.262 kb on - strandat 716.288 kb on - strandat 716.293 kb on - strandat 716.342 kb on + strandat 716.528 kb on + strand, within CA264_03075at 716.529 kb on - strand, within CA264_03075at 716.578 kb on - strand, within CA264_03075at 716.581 kb on + strand, within CA264_03075at 716.581 kb on + strand, within CA264_03075at 716.582 kb on - strand, within CA264_03075at 716.582 kb on - strand, within CA264_03075at 716.582 kb on - strand, within CA264_03075at 716.582 kb on - strand, within CA264_03075at 716.583 kb on + strand, within CA264_03075at 716.602 kb on + strand, within CA264_03075at 716.603 kb on - strand, within CA264_03075at 716.613 kb on + strand, within CA264_03075at 716.639 kb on - strand, within CA264_03075at 716.688 kb on + strand, within CA264_03075at 716.689 kb on - strand, within CA264_03075at 716.737 kb on - strand, within CA264_03075at 716.739 kb on - strand, within CA264_03075at 716.813 kb on + strand, within CA264_03075at 716.969 kb on + strand, within CA264_03075at 717.056 kb on - strand, within CA264_03075at 717.056 kb on - strand, within CA264_03075at 717.091 kb on + strand, within CA264_03075at 717.091 kb on + strand, within CA264_03075at 717.095 kb on + strand, within CA264_03075at 717.095 kb on + strand, within CA264_03075at 717.106 kb on + strand, within CA264_03075at 717.252 kb on + strand, within CA264_03075at 717.253 kb on - strand, within CA264_03075at 717.255 kb on - strand, within CA264_03075at 717.260 kb on - strand, within CA264_03075at 717.260 kb on - strand, within CA264_03075at 717.260 kb on - strand, within CA264_03075

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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714,208 + CA264_03065 0.35 +0.0
714,227 - CA264_03065 0.37 -0.6
714,365 + CA264_03065 0.47 +0.7
714,424 + CA264_03065 0.52 +0.8
714,424 + CA264_03065 0.52 -2.0
714,424 + CA264_03065 0.52 +0.5
714,424 + CA264_03065 0.52 +0.0
714,425 - CA264_03065 0.52 -0.7
714,425 - CA264_03065 0.52 -0.2
714,425 - CA264_03065 0.52 +0.9
714,447 - CA264_03065 0.53 -0.2
714,456 + CA264_03065 0.54 +0.2
714,456 + CA264_03065 0.54 +1.2
714,517 + CA264_03065 0.59 -0.1
714,518 - CA264_03065 0.59 +0.1
714,518 - CA264_03065 0.59 -1.8
714,577 + CA264_03065 0.63 +0.5
714,578 - CA264_03065 0.63 +0.3
714,584 + CA264_03065 0.64 +0.2
714,585 - CA264_03065 0.64 -0.5
714,678 + CA264_03065 0.71 -0.4
714,679 - CA264_03065 0.71 -1.0
714,679 - CA264_03065 0.71 +1.6
714,689 + CA264_03065 0.72 -0.8
714,752 - CA264_03065 0.76 +0.6
714,790 - CA264_03065 0.79 -0.3
714,803 - CA264_03065 0.80 -1.5
714,809 - CA264_03065 0.81 -0.9
714,811 + CA264_03065 0.81 -0.0
714,812 - CA264_03065 0.81 -1.0
714,905 - CA264_03065 0.88 -0.4
714,972 - -0.8
715,038 + -0.9
715,038 + -0.2
715,049 - +0.5
715,053 + +0.3
715,053 + -0.5
715,054 - -0.0
715,054 - -0.6
715,090 + -0.6
715,099 - -0.1
715,126 + +0.5
715,127 - -0.1
715,135 - -0.4
715,138 + +0.2
715,139 - -0.7
715,139 - -0.0
715,139 - -0.1
715,145 + +0.3
715,167 - -0.4
715,234 + CA264_03070 0.13 +0.0
715,250 + CA264_03070 0.14 +0.6
715,286 - CA264_03070 0.17 +1.0
715,292 - CA264_03070 0.17 -0.1
715,292 - CA264_03070 0.17 +0.4
715,341 - CA264_03070 0.21 +1.0
715,399 + CA264_03070 0.26 +0.3
715,400 - CA264_03070 0.26 +0.4
715,477 + CA264_03070 0.33 +0.4
715,477 + CA264_03070 0.33 +0.5
715,574 + CA264_03070 0.41 +0.9
715,575 - CA264_03070 0.41 +1.3
715,575 - CA264_03070 0.41 -0.6
715,583 + CA264_03070 0.42 +0.3
715,685 + CA264_03070 0.50 +1.4
715,685 + CA264_03070 0.50 +0.1
715,690 - CA264_03070 0.50 +1.3
715,747 + CA264_03070 0.55 -1.8
715,799 - CA264_03070 0.59 +0.8
715,799 - CA264_03070 0.59 -0.1
715,857 + CA264_03070 0.64 -0.3
715,901 - CA264_03070 0.68 -1.0
715,916 + CA264_03070 0.69 -0.2
715,968 + CA264_03070 0.73 +0.3
715,968 + CA264_03070 0.73 -0.2
715,969 - CA264_03070 0.74 +0.2
715,969 - CA264_03070 0.74 -0.8
715,978 - CA264_03070 0.74 +0.3
715,983 + CA264_03070 0.75 +0.0
715,983 + CA264_03070 0.75 -1.4
715,984 - CA264_03070 0.75 -0.5
715,984 - CA264_03070 0.75 +0.6
715,984 - CA264_03070 0.75 +1.4
715,984 - CA264_03070 0.75 +0.2
716,010 - CA264_03070 0.77 +0.6
716,015 - CA264_03070 0.77 +0.1
716,090 + CA264_03070 0.84 +1.5
716,090 + CA264_03070 0.84 +0.4
716,105 + CA264_03070 0.85 +0.1
716,142 + CA264_03070 0.88 +1.6
716,151 - CA264_03070 0.89 +0.9
716,168 + -0.2
716,169 - +0.2
716,170 + -0.7
716,170 + +0.0
716,171 - +0.3
716,171 - -0.0
716,257 + -0.4
716,257 + +0.8
716,262 - -0.2
716,288 - +0.2
716,293 - +1.6
716,342 + +0.8
716,528 + CA264_03075 0.15 -0.7
716,529 - CA264_03075 0.15 +0.9
716,578 - CA264_03075 0.18 +0.6
716,581 + CA264_03075 0.18 -0.1
716,581 + CA264_03075 0.18 +0.6
716,582 - CA264_03075 0.18 -0.2
716,582 - CA264_03075 0.18 +0.4
716,582 - CA264_03075 0.18 +0.1
716,582 - CA264_03075 0.18 +0.7
716,583 + CA264_03075 0.18 -0.7
716,602 + CA264_03075 0.20 -0.6
716,603 - CA264_03075 0.20 +1.7
716,613 + CA264_03075 0.20 +0.1
716,639 - CA264_03075 0.22 -0.2
716,688 + CA264_03075 0.25 -0.1
716,689 - CA264_03075 0.25 -0.5
716,737 - CA264_03075 0.28 -0.3
716,739 - CA264_03075 0.28 +1.2
716,813 + CA264_03075 0.33 -0.1
716,969 + CA264_03075 0.43 -0.2
717,056 - CA264_03075 0.49 +0.5
717,056 - CA264_03075 0.49 +0.2
717,091 + CA264_03075 0.51 -0.2
717,091 + CA264_03075 0.51 +1.6
717,095 + CA264_03075 0.51 -0.3
717,095 + CA264_03075 0.51 -0.1
717,106 + CA264_03075 0.52 +0.6
717,252 + CA264_03075 0.62 +0.6
717,253 - CA264_03075 0.62 -0.8
717,255 - CA264_03075 0.62 -0.3
717,260 - CA264_03075 0.62 -0.4
717,260 - CA264_03075 0.62 +1.1
717,260 - CA264_03075 0.62 +0.8

Or see this region's nucleotide sequence