Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02975

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02970 and CA264_02975 are separated by 57 nucleotidesCA264_02975 and CA264_02980 are separated by 12 nucleotidesCA264_02980 and CA264_02985 are separated by 44 nucleotides CA264_02970: CA264_02970 - glucose-1-phosphate cytidylyltransferase, at 681,862 to 682,665 _02970 CA264_02975: CA264_02975 - NAD-dependent epimerase, at 682,723 to 683,808 _02975 CA264_02980: CA264_02980 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 683,821 to 684,384 _02980 CA264_02985: CA264_02985 - NAD(P)-dependent oxidoreductase, at 684,429 to 685,790 _02985 Position (kb) 682 683 684Strain fitness (log2 ratio) -2 -1 0 1 2at 681.746 kb on + strandat 681.846 kb on + strandat 681.854 kb on + strandat 681.858 kb on - strandat 681.859 kb on + strandat 681.860 kb on - strandat 681.874 kb on - strandat 681.875 kb on + strandat 681.875 kb on + strandat 681.875 kb on + strandat 681.980 kb on + strand, within CA264_02970at 681.980 kb on + strand, within CA264_02970at 681.981 kb on - strand, within CA264_02970at 681.983 kb on - strand, within CA264_02970at 681.983 kb on - strand, within CA264_02970at 681.992 kb on - strand, within CA264_02970at 681.992 kb on - strand, within CA264_02970at 682.070 kb on - strand, within CA264_02970at 682.221 kb on + strand, within CA264_02970at 682.462 kb on + strand, within CA264_02970at 682.463 kb on - strand, within CA264_02970at 682.664 kb on - strandat 682.664 kb on - strandat 682.703 kb on + strandat 682.703 kb on + strandat 682.706 kb on + strandat 682.706 kb on + strandat 682.707 kb on - strandat 682.708 kb on + strandat 682.708 kb on + strandat 682.708 kb on + strandat 682.710 kb on + strandat 682.711 kb on - strandat 682.711 kb on - strandat 682.711 kb on - strandat 682.811 kb on + strandat 682.811 kb on + strandat 682.812 kb on - strandat 683.009 kb on + strand, within CA264_02975at 683.014 kb on + strand, within CA264_02975at 683.015 kb on - strand, within CA264_02975at 683.015 kb on - strand, within CA264_02975at 683.017 kb on - strand, within CA264_02975at 683.047 kb on - strand, within CA264_02975at 683.095 kb on + strand, within CA264_02975at 683.095 kb on + strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.096 kb on - strand, within CA264_02975at 683.367 kb on - strand, within CA264_02975at 683.400 kb on + strand, within CA264_02975at 683.401 kb on - strand, within CA264_02975at 683.501 kb on + strand, within CA264_02975at 683.502 kb on - strand, within CA264_02975at 683.557 kb on + strand, within CA264_02975at 683.557 kb on + strand, within CA264_02975at 683.558 kb on - strand, within CA264_02975at 683.565 kb on - strand, within CA264_02975at 683.580 kb on + strand, within CA264_02975at 683.612 kb on - strand, within CA264_02975at 683.686 kb on - strand, within CA264_02975at 683.686 kb on - strand, within CA264_02975at 683.736 kb on + strandat 683.736 kb on + strandat 683.736 kb on + strandat 683.737 kb on - strandat 683.807 kb on - strandat 683.811 kb on - strandat 683.812 kb on + strandat 683.868 kb on - strandat 683.967 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 684.064 kb on + strand, within CA264_02980at 684.064 kb on + strand, within CA264_02980at 684.065 kb on - strand, within CA264_02980at 684.138 kb on + strand, within CA264_02980at 684.139 kb on - strand, within CA264_02980at 684.215 kb on - strand, within CA264_02980at 684.215 kb on - strand, within CA264_02980at 684.232 kb on + strand, within CA264_02980at 684.233 kb on - strand, within CA264_02980at 684.419 kb on - strandat 684.421 kb on - strandat 684.434 kb on - strandat 684.436 kb on + strandat 684.474 kb on - strandat 684.539 kb on + strandat 684.539 kb on + strandat 684.540 kb on - strandat 684.544 kb on - strandat 684.544 kb on - strandat 684.607 kb on - strand, within CA264_02985at 684.681 kb on - strand, within CA264_02985at 684.749 kb on + strand, within CA264_02985at 684.778 kb on + strand, within CA264_02985

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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681,746 + +0.1
681,846 + -0.0
681,854 + +0.7
681,858 - +0.9
681,859 + +0.5
681,860 - +0.2
681,874 - +1.2
681,875 + -0.1
681,875 + +0.1
681,875 + -0.1
681,980 + CA264_02970 0.15 +2.2
681,980 + CA264_02970 0.15 +0.2
681,981 - CA264_02970 0.15 +0.4
681,983 - CA264_02970 0.15 +0.7
681,983 - CA264_02970 0.15 +0.2
681,992 - CA264_02970 0.16 -0.6
681,992 - CA264_02970 0.16 -1.7
682,070 - CA264_02970 0.26 -0.3
682,221 + CA264_02970 0.45 +0.1
682,462 + CA264_02970 0.75 -1.8
682,463 - CA264_02970 0.75 -0.3
682,664 - +1.3
682,664 - +0.8
682,703 + +0.0
682,703 + +0.5
682,706 + -2.5
682,706 + +0.7
682,707 - +0.1
682,708 + +0.2
682,708 + +0.2
682,708 + -1.8
682,710 + -0.1
682,711 - -0.8
682,711 - +0.3
682,711 - -0.8
682,811 + -0.7
682,811 + -0.7
682,812 - +0.7
683,009 + CA264_02975 0.26 +0.1
683,014 + CA264_02975 0.27 +0.4
683,015 - CA264_02975 0.27 +0.0
683,015 - CA264_02975 0.27 +0.2
683,017 - CA264_02975 0.27 +0.1
683,047 - CA264_02975 0.30 +0.2
683,095 + CA264_02975 0.34 -1.4
683,095 + CA264_02975 0.34 -0.8
683,096 - CA264_02975 0.34 +0.2
683,096 - CA264_02975 0.34 +0.1
683,096 - CA264_02975 0.34 -0.1
683,096 - CA264_02975 0.34 -0.1
683,367 - CA264_02975 0.59 +0.5
683,400 + CA264_02975 0.62 +0.4
683,401 - CA264_02975 0.62 -0.3
683,501 + CA264_02975 0.72 -0.8
683,502 - CA264_02975 0.72 -0.9
683,557 + CA264_02975 0.77 -0.4
683,557 + CA264_02975 0.77 -0.1
683,558 - CA264_02975 0.77 -0.4
683,565 - CA264_02975 0.78 -0.3
683,580 + CA264_02975 0.79 -1.2
683,612 - CA264_02975 0.82 +0.4
683,686 - CA264_02975 0.89 -0.4
683,686 - CA264_02975 0.89 -0.1
683,736 + -0.0
683,736 + -0.8
683,736 + -0.1
683,737 - +0.9
683,807 - -0.1
683,811 - +1.5
683,812 + +0.3
683,868 - -0.9
683,967 - CA264_02980 0.26 -1.5
683,972 - CA264_02980 0.27 -0.1
683,972 - CA264_02980 0.27 -0.3
683,972 - CA264_02980 0.27 -0.2
683,972 - CA264_02980 0.27 -2.4
684,064 + CA264_02980 0.43 -0.4
684,064 + CA264_02980 0.43 +0.7
684,065 - CA264_02980 0.43 -0.5
684,138 + CA264_02980 0.56 -1.4
684,139 - CA264_02980 0.56 +1.6
684,215 - CA264_02980 0.70 -0.4
684,215 - CA264_02980 0.70 -0.1
684,232 + CA264_02980 0.73 +0.9
684,233 - CA264_02980 0.73 -0.2
684,419 - -0.2
684,421 - -1.1
684,434 - +0.4
684,436 + +2.2
684,474 - +0.2
684,539 + -0.8
684,539 + +0.7
684,540 - -0.3
684,544 - -0.1
684,544 - +0.1
684,607 - CA264_02985 0.13 -0.1
684,681 - CA264_02985 0.19 -0.5
684,749 + CA264_02985 0.23 +0.6
684,778 + CA264_02985 0.26 +0.4

Or see this region's nucleotide sequence