Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02595

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02585 and CA264_02590 are separated by 219 nucleotidesCA264_02590 and CA264_02595 are separated by 195 nucleotidesCA264_02595 and CA264_02600 are separated by 226 nucleotides CA264_02585: CA264_02585 - hypothetical protein, at 600,986 to 601,609 _02585 CA264_02590: CA264_02590 - ribosomal subunit interface protein, at 601,829 to 602,134 _02590 CA264_02595: CA264_02595 - oxidoreductase, at 602,330 to 603,112 _02595 CA264_02600: CA264_02600 - DsbA family protein, at 603,339 to 603,968 _02600 Position (kb) 602 603 604Strain fitness (log2 ratio) -2 -1 0 1 2 3at 601.440 kb on + strand, within CA264_02585at 601.440 kb on + strand, within CA264_02585at 601.441 kb on - strand, within CA264_02585at 601.445 kb on + strand, within CA264_02585at 601.446 kb on - strand, within CA264_02585at 601.446 kb on - strand, within CA264_02585at 601.487 kb on + strand, within CA264_02585at 601.559 kb on - strandat 601.559 kb on - strandat 601.647 kb on - strandat 601.667 kb on + strandat 601.668 kb on - strandat 601.668 kb on - strandat 601.669 kb on + strandat 601.669 kb on + strandat 601.669 kb on + strandat 601.674 kb on + strandat 601.680 kb on - strandat 601.759 kb on + strandat 601.815 kb on + strandat 601.835 kb on + strandat 601.836 kb on - strandat 601.836 kb on - strandat 601.837 kb on + strandat 601.857 kb on + strandat 601.869 kb on + strand, within CA264_02590at 601.870 kb on - strand, within CA264_02590at 601.885 kb on - strand, within CA264_02590at 601.903 kb on - strand, within CA264_02590at 601.903 kb on - strand, within CA264_02590at 602.000 kb on - strand, within CA264_02590at 602.049 kb on + strand, within CA264_02590at 602.050 kb on - strand, within CA264_02590at 602.078 kb on + strand, within CA264_02590at 602.079 kb on - strand, within CA264_02590at 602.177 kb on + strandat 602.177 kb on + strandat 602.178 kb on - strandat 602.180 kb on - strandat 602.187 kb on + strandat 602.187 kb on + strandat 602.285 kb on + strandat 602.286 kb on - strandat 602.287 kb on + strandat 602.287 kb on + strandat 602.287 kb on + strandat 602.287 kb on + strandat 602.291 kb on + strandat 602.292 kb on - strandat 602.292 kb on - strandat 602.299 kb on + strandat 602.300 kb on - strandat 602.300 kb on - strandat 602.300 kb on - strandat 602.302 kb on - strandat 602.316 kb on + strandat 602.317 kb on - strandat 602.342 kb on + strandat 602.388 kb on + strandat 602.388 kb on + strandat 602.398 kb on + strandat 602.435 kb on - strand, within CA264_02595at 602.505 kb on + strand, within CA264_02595at 602.506 kb on - strand, within CA264_02595at 602.526 kb on + strand, within CA264_02595at 603.052 kb on + strandat 603.106 kb on + strandat 603.117 kb on - strandat 603.117 kb on - strandat 603.131 kb on - strandat 603.137 kb on + strandat 603.144 kb on + strandat 603.145 kb on - strandat 603.152 kb on - strandat 603.226 kb on - strandat 603.226 kb on - strandat 603.302 kb on - strandat 603.360 kb on - strandat 603.372 kb on + strandat 603.530 kb on - strand, within CA264_02600at 603.530 kb on - strand, within CA264_02600at 603.530 kb on - strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.564 kb on + strand, within CA264_02600at 603.565 kb on - strand, within CA264_02600at 603.607 kb on + strand, within CA264_02600at 603.844 kb on + strand, within CA264_02600at 603.868 kb on - strand, within CA264_02600at 603.879 kb on + strand, within CA264_02600at 603.880 kb on - strand, within CA264_02600at 603.922 kb on - strandat 603.999 kb on + strandat 603.999 kb on + strandat 604.000 kb on - strandat 604.007 kb on + strandat 604.007 kb on + strandat 604.008 kb on - strandat 604.008 kb on - strandat 604.011 kb on + strandat 604.011 kb on + strandat 604.073 kb on + strandat 604.079 kb on + strandat 604.079 kb on + strandat 604.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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601,440 + CA264_02585 0.73 -0.0
601,440 + CA264_02585 0.73 -0.5
601,441 - CA264_02585 0.73 -0.4
601,445 + CA264_02585 0.74 +0.2
601,446 - CA264_02585 0.74 +0.7
601,446 - CA264_02585 0.74 +0.2
601,487 + CA264_02585 0.80 +1.7
601,559 - -0.4
601,559 - -0.0
601,647 - +1.8
601,667 + -0.6
601,668 - -0.4
601,668 - -1.2
601,669 + -0.4
601,669 + -0.1
601,669 + -0.7
601,674 + -0.1
601,680 - +0.3
601,759 + +0.3
601,815 + +0.1
601,835 + +0.1
601,836 - +0.5
601,836 - +0.2
601,837 + +0.5
601,857 + -1.5
601,869 + CA264_02590 0.13 +0.2
601,870 - CA264_02590 0.13 +2.8
601,885 - CA264_02590 0.18 -0.2
601,903 - CA264_02590 0.24 +0.6
601,903 - CA264_02590 0.24 -2.5
602,000 - CA264_02590 0.56 -0.1
602,049 + CA264_02590 0.72 +0.8
602,050 - CA264_02590 0.72 -0.2
602,078 + CA264_02590 0.81 -0.5
602,079 - CA264_02590 0.82 +1.0
602,177 + +0.0
602,177 + +0.3
602,178 - +0.5
602,180 - +0.3
602,187 + +0.1
602,187 + -0.6
602,285 + -0.3
602,286 - -0.0
602,287 + +0.1
602,287 + -1.1
602,287 + +0.4
602,287 + -0.3
602,291 + -0.5
602,292 - -0.4
602,292 - -0.5
602,299 + -0.4
602,300 - +0.2
602,300 - -0.6
602,300 - +0.1
602,302 - -0.4
602,316 + -0.0
602,317 - -0.9
602,342 + -1.1
602,388 + -0.5
602,388 + +0.4
602,398 + -0.6
602,435 - CA264_02595 0.13 +1.6
602,505 + CA264_02595 0.22 +1.3
602,506 - CA264_02595 0.22 -0.2
602,526 + CA264_02595 0.25 +0.4
603,052 + -0.1
603,106 + +0.8
603,117 - +1.8
603,117 - -0.5
603,131 - -0.0
603,137 + -0.4
603,144 + -0.1
603,145 - -1.6
603,152 - -0.6
603,226 - +0.3
603,226 - -0.4
603,302 - -1.4
603,360 - +1.0
603,372 + -0.9
603,530 - CA264_02600 0.30 +0.2
603,530 - CA264_02600 0.30 +0.2
603,530 - CA264_02600 0.30 -0.1
603,564 + CA264_02600 0.36 -0.4
603,564 + CA264_02600 0.36 -0.4
603,564 + CA264_02600 0.36 -0.4
603,564 + CA264_02600 0.36 -1.0
603,565 - CA264_02600 0.36 -0.7
603,607 + CA264_02600 0.43 +0.4
603,844 + CA264_02600 0.80 -0.8
603,868 - CA264_02600 0.84 +0.1
603,879 + CA264_02600 0.86 +0.3
603,880 - CA264_02600 0.86 -0.3
603,922 - -1.5
603,999 + -0.6
603,999 + -0.6
604,000 - +1.4
604,007 + +0.2
604,007 + +0.2
604,008 - -0.4
604,008 - +0.4
604,011 + -0.1
604,011 + -0.1
604,073 + +0.3
604,079 + +0.8
604,079 + -0.1
604,080 - +0.0

Or see this region's nucleotide sequence