Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02500

Experiment: m.b. D-Cycloserine 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02495 and CA264_02500 are separated by 647 nucleotidesCA264_02500 and CA264_02505 are separated by 50 nucleotides CA264_02495: CA264_02495 - hypothetical protein, at 579,925 to 580,821 _02495 CA264_02500: CA264_02500 - hypothetical protein, at 581,469 to 581,738 _02500 CA264_02505: CA264_02505 - hypothetical protein, at 581,789 to 582,454 _02505 Position (kb) 581 582Strain fitness (log2 ratio) -2 -1 0 1 2at 580.497 kb on + strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.524 kb on - strand, within CA264_02495at 580.616 kb on - strand, within CA264_02495at 580.682 kb on + strand, within CA264_02495at 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.803 kb on - strandat 580.818 kb on - strandat 580.927 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.942 kb on + strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.943 kb on - strandat 580.945 kb on - strandat 580.945 kb on - strandat 580.946 kb on + strandat 580.947 kb on - strandat 580.959 kb on - strandat 580.961 kb on + strandat 580.964 kb on + strandat 580.965 kb on - strandat 581.081 kb on - strandat 581.081 kb on - strandat 581.093 kb on + strandat 581.100 kb on - strandat 581.100 kb on - strandat 581.101 kb on + strandat 581.102 kb on - strandat 581.104 kb on + strandat 581.178 kb on - strandat 581.178 kb on - strandat 581.191 kb on + strandat 581.191 kb on + strandat 581.191 kb on + strandat 581.197 kb on + strandat 581.198 kb on - strandat 581.201 kb on - strandat 581.250 kb on - strandat 581.258 kb on - strandat 581.281 kb on - strandat 581.283 kb on - strandat 581.283 kb on - strandat 581.290 kb on + strandat 581.308 kb on + strandat 581.308 kb on + strandat 581.309 kb on - strandat 581.309 kb on - strandat 581.317 kb on + strandat 581.319 kb on + strandat 581.325 kb on + strandat 581.326 kb on - strandat 581.326 kb on - strandat 581.334 kb on - strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.444 kb on + strandat 581.606 kb on - strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.657 kb on + strand, within CA264_02500at 581.682 kb on + strand, within CA264_02500at 581.683 kb on - strand, within CA264_02500at 581.722 kb on - strandat 581.732 kb on - strandat 581.790 kb on + strandat 581.889 kb on + strand, within CA264_02505at 581.899 kb on + strand, within CA264_02505at 581.905 kb on + strand, within CA264_02505at 581.963 kb on - strand, within CA264_02505at 581.963 kb on - strand, within CA264_02505at 582.005 kb on - strand, within CA264_02505at 582.051 kb on + strand, within CA264_02505at 582.052 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.162 kb on - strand, within CA264_02505at 582.186 kb on - strand, within CA264_02505at 582.207 kb on + strand, within CA264_02505at 582.332 kb on + strand, within CA264_02505at 582.336 kb on + strand, within CA264_02505at 582.337 kb on - strand, within CA264_02505at 582.378 kb on - strand, within CA264_02505at 582.454 kb on + strandat 582.482 kb on - strandat 582.485 kb on + strandat 582.485 kb on + strandat 582.485 kb on + strandat 582.486 kb on - strandat 582.507 kb on - strandat 582.517 kb on - strandat 582.517 kb on - strandat 582.531 kb on + strandat 582.532 kb on - strandat 582.532 kb on - strandat 582.534 kb on + strandat 582.534 kb on + strandat 582.535 kb on - strandat 582.556 kb on - strandat 582.565 kb on - strandat 582.615 kb on + strandat 582.658 kb on - strandat 582.658 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.032 mg/ml
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580,497 + CA264_02495 0.64 -2.1
580,524 - CA264_02495 0.67 +1.6
580,524 - CA264_02495 0.67 -0.3
580,524 - CA264_02495 0.67 -0.3
580,616 - CA264_02495 0.77 -0.1
580,682 + CA264_02495 0.84 +0.1
580,803 - -0.2
580,803 - -0.6
580,803 - -0.8
580,803 - -0.2
580,818 - +0.2
580,927 + +0.1
580,942 + -0.5
580,942 + -0.4
580,942 + -0.0
580,942 + +0.9
580,943 - +0.3
580,943 - -0.6
580,943 - +0.2
580,943 - -0.3
580,943 - -2.1
580,943 - -0.4
580,945 - -0.1
580,945 - -0.8
580,946 + -0.2
580,947 - -0.1
580,959 - +0.2
580,961 + -2.4
580,964 + -0.1
580,965 - -1.4
581,081 - -0.6
581,081 - -0.0
581,093 + -0.4
581,100 - -0.0
581,100 - -0.1
581,101 + +0.2
581,102 - -0.7
581,104 + -0.2
581,178 - +1.4
581,178 - -0.3
581,191 + +0.5
581,191 + -0.4
581,191 + +1.0
581,197 + -0.6
581,198 - -0.9
581,201 - +0.7
581,250 - -1.7
581,258 - +1.9
581,281 - +0.0
581,283 - -1.4
581,283 - +1.3
581,290 + -0.1
581,308 + -0.4
581,308 + +0.3
581,309 - +0.8
581,309 - -0.4
581,317 + -0.3
581,319 + -2.7
581,325 + -0.5
581,326 - +0.5
581,326 - -0.2
581,334 - -0.7
581,444 + -2.2
581,444 + +0.2
581,444 + +0.3
581,444 + -0.6
581,606 - CA264_02500 0.51 +1.1
581,657 + CA264_02500 0.70 -1.3
581,657 + CA264_02500 0.70 -2.1
581,657 + CA264_02500 0.70 +0.7
581,682 + CA264_02500 0.79 +1.1
581,683 - CA264_02500 0.79 -0.1
581,722 - -0.5
581,732 - +0.5
581,790 + -0.1
581,889 + CA264_02505 0.15 -1.2
581,899 + CA264_02505 0.17 -0.8
581,905 + CA264_02505 0.17 +0.8
581,963 - CA264_02505 0.26 +0.6
581,963 - CA264_02505 0.26 -0.4
582,005 - CA264_02505 0.32 +0.7
582,051 + CA264_02505 0.39 +0.5
582,052 - CA264_02505 0.39 +0.0
582,162 - CA264_02505 0.56 +0.6
582,162 - CA264_02505 0.56 -0.1
582,162 - CA264_02505 0.56 -0.0
582,162 - CA264_02505 0.56 -0.2
582,186 - CA264_02505 0.60 +0.1
582,207 + CA264_02505 0.63 -1.8
582,332 + CA264_02505 0.82 -0.3
582,336 + CA264_02505 0.82 +0.1
582,337 - CA264_02505 0.82 -0.1
582,378 - CA264_02505 0.88 -0.4
582,454 + -0.4
582,482 - -0.5
582,485 + +0.9
582,485 + +0.3
582,485 + +1.4
582,486 - +1.5
582,507 - +1.4
582,517 - +0.2
582,517 - +0.6
582,531 + +0.2
582,532 - +1.5
582,532 - +1.2
582,534 + -0.1
582,534 + +1.4
582,535 - -0.1
582,556 - +0.8
582,565 - +0.4
582,615 + +0.5
582,658 - +0.2
582,658 - +0.3

Or see this region's nucleotide sequence